Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4613g00017 ATGGGAACTGGTAACAACATATCATGCCCTGCACCCATGAAGGCCACGTCCAACGGAGGGTTCCAACATGAAAACCCTCTGGATTATGCGCTTCCTCTGTTAATCCTCCAAATATGTTTGGTCGTTGCTTTTACTAGATTTCTTGCATTCCTCTTCAGACCCCTCAGGCAACCCAGAGTCATTGCTGAAATCATAGGAGGAATACTACTCGGGCCATCTGCAATTGGGCGAAACGAGAAGTTTCTGAATGCGGTTTTTCCAGAGAAAAGCATCACAGTTCTTGACACACTGGCCAACATAGGTCTTTTGTTTTTTTTGTTTCTCGTGGGACTTGAGCTTGACATGCGTGCAATTCGACGTACTGGTCACAAGGCCTTAGGCATTGCCCTCTGTGGGATCACTGTGCCTTTTGTTCTTGGCATTGGCACTTCCATTGCTCTTCGAGCCACTGTATCCAAAGGTGCTGAGCTATTTCCTTTTCTAGTCTTTATGGGTGTTGCTCTCTCGATCACCGCCTTCCCTGTCCTTGCGAGGATCCTGGCTGAGCTTAAACTCCTAACAACTGATGTTGGTCGCATTGCAATGTCTGCTGCTGCTGTCAATGATGTTGCAGCTTGGATTCTTCTTGCTCTTGCCATAGCCCTTTCTGGTTCTGAAGCATCTCCCTTTGTTCCTCTCTGGGTATTGCTCTGTGGTGCTGCTTTTGTCATCTTTGTTGTCTTTGCCATTAGGCCGTTGCTTGTGGCTATGGCTAACCGTTCTCTGGAGGGTGAGCCAGTGAAGGAGGTCTACATATGCATCACGTTGACTCTGGTTTTGGCTTGTAGTTTTGTCACTGATACTATTGGAATTCATTCCCTCTTTGGGGCTTTTGTGGTTGGTACTGTTATGCCCAAAGAAGGTTCCTTTTCTGGGGTGTTGACCGAAAGGATAGAAGACTTGGTTTCTGGCCTTTTCATGCCATTATATTTTGTGTCCAGTGGGTTGAAAACTGATGTAGCAACAATTAAGGGAGGTCTTTCTTGGGCAATGCTAATGCTTGTTATATTCAACGCTTGCTTTGGGAAGATTATTGGCACTACTGTTGTTTCATTACTGTATAAGGTGCCTGCCAGAGAAGCCCTGGCTCTTGGATTTCTCATGAACACAAAGGGCTTGGTAGAACTCATTGTTCTCAACATTGGGAGGGACCTTAAGGTGCTGAATGACCAAGCATTTGCCATTTGTGTTGTCATGGCATTGTTTACCACCTTCATCTCCACCCCAATAGTGATGGCTGTATATAAACCAGCTCGCAGAGGAGCACCTTACAAGCACAAAACAATTCAACGAGATCCCGACACTGAGCTTCGAATGCTAGCTTGCTTCCACAGCACCCGTAACATTCCATCGCTGATCAATCTAATAGAGTGTTCCCGTGGAACAGGAAGGAAAGGAAAGCTTTGTATCTATGCAATGCATTTGATGGAGCTTTCGGAGCGATCTTCGGCAATCACAATGGTTCACAAGGCACACAAAAATGGCATGCCCTTTTGTAACAAGAAGCGGGACGGCAAAGATCAAATGATCATAGCTTTTCAGGCATATGAGAAACTGAGCAGTGTCAGTGTCCGCCCCATGACAGTCATTTCTGGTCTCAATAGCATCCATGAGGATATTTGTACTACTGCTCACAGAAAGCGTGCAGCCATGATCATCCTTCCATTCCACAAACACCAACGTGTTGATGGATCGATGGAGTCACTGGGACATTCATTCCAAGAGATGAATCAACTTGTGCTATGTCATGCTCCTTGCTCGGTGGGAATTTTTGTTGATCGAGGTCTTGGAGGGACGAGCCAAGTCCAAGCCAGTGATGTGTCTTATAAGATAGTGGTACCCTTCTTTGGAGGGCGTGATGATCGTGAAGCTCTTTGTTATGGAATGAGAATGGCCGAGCACCCGGGTATTTTTCTCACCGTGCTTAAGTTTGTAACTCCACCAGGGACATCATTGGCCTTCGGTGCTAAATCGGTTGAGGTGTCATCAAAGAAATATAGGAAAACAACGGATGTGGTTGATGTCAATGATTATGATGATAAAGATGATCAATTGTGGAGTGAGTTTTTAAGTGCATGCAACAACAACACCCAAGAGACAATGAAGTATGAGCAAAAGCTAGTGGAAAGCAAAGGAGATATTGAGATAGCATTGAAGGAAATGCATAGATGCAACCTCATATTGGTTGGTAGAATGCCACCAGTGGCTCCTTTGGTTAGCAAAAGTGACTGTCCAGAGCTTGGACCTGTTGGAAGCTTTGTTGCTTCTTCAGATTTTTCCACTGTTACGTCAGTTATGGTAATTCAGCAATACAATCCCTCAACTGACGTTCATCCATTGGTGATGGAGGAATTTGATTCCGCAGATATGTCAGATTCACCAGGGAGTCAATAA 2433 0.4521 MGTGNNISCPAPMKATSNGGFQHENPLDYALPLLILQICLVVAFTRFLAFLFRPLRQPRVIAEIIGGILLGPSAIGRNEKFLNAVFPEKSITVLDTLANIGLLFFLFLVGLELDMRAIRRTGHKALGIALCGITVPFVLGIGTSIALRATVSKGAELFPFLVFMGVALSITAFPVLARILAELKLLTTDVGRIAMSAAAVNDVAAWILLALAIALSGSEASPFVPLWVLLCGAAFVIFVVFAIRPLLVAMANRSLEGEPVKEVYICITLTLVLACSFVTDTIGIHSLFGAFVVGTVMPKEGSFSGVLTERIEDLVSGLFMPLYFVSSGLKTDVATIKGGLSWAMLMLVIFNACFGKIIGTTVVSLLYKVPAREALALGFLMNTKGLVELIVLNIGRDLKVLNDQAFAICVVMALFTTFISTPIVMAVYKPARRGAPYKHKTIQRDPDTELRMLACFHSTRNIPSLINLIECSRGTGRKGKLCIYAMHLMELSERSSAITMVHKAHKNGMPFCNKKRDGKDQMIIAFQAYEKLSSVSVRPMTVISGLNSIHEDICTTAHRKRAAMIILPFHKHQRVDGSMESLGHSFQEMNQLVLCHAPCSVGIFVDRGLGGTSQVQASDVSYKIVVPFFGGRDDREALCYGMRMAEHPGIFLTVLKFVTPPGTSLAFGAKSVEVSSKKYRKTTDVVDVNDYDDKDDQLWSEFLSACNNNTQETMKYEQKLVESKGDIEIALKEMHRCNLILVGRMPPVAPLVSKSDCPELGPVGSFVASSDFSTVTSVMVIQQYNPSTDVHPLVMEEFDSADMSDSPGSQ 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4613g00017 810 Gene3D - 489 746 - -
Vium4613g00017 810 FunFam Cation/H(+) antiporter 15 33 435 - -
Vium4613g00017 810 PANTHER CATION/H + ANTIPORTER 8 785 - -
Vium4613g00017 810 Pfam Sodium/hydrogen exchanger family 39 424 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vium4613g00017 810 Gene3D - 33 435 IPR038770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4613g00017 Vium-Chr4613 125306 128619 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4613g00017 8 805 Antiporter Super Family AT3G17630 67.995 0.0 1080
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4613g00017 K26731 - gmx:100780382 1338.94