Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4613g00014 ATGGCTGGTGTGAACACCCTGCCAGAAGAAAGGTGGAACCTTTTTCCTTCTTCTGCTATGGAGATTGCTCTTGACAGTGTTGATGGAAGGGGTGAGAACATGGAGGTCCACAACACCATAACTGATGATGCCTCTGTGCATTTCTCTGCTACCAGGCCAGTGGCAGTGCCATCATCTGGACCGATCAAAGTGATTCCAAATCCAACCAAGTTCACCATCCTCTATAAGGGGAATATGTGTGTTTATGAAGGAATTCCCGCAGAAAAGGTGCGTGAAATAATGTTGATTGCTTCTGTCTCTGCTAAGTCTGCTGAAATGAAGAGAGGGGTCCCTTGGACTTCACTCATTTCAAAAAGTCCTTCTTCTCTACTGGGAAACTCTACTGATTCAGCAAAGAAGAGTTCCATTCAAAGGCTGCAAGATGAATTTCCTCTTGCACGCAGACAATCACTTCAAAGGTTTCTTGAGAAGCGAAGAAACAGGTTGGCTAACAAAGCACCTTACGCCTCAAGTAAAAACATGGCTGACAACATAGAGAACAACTTCTTCTCTGAAATGTCACATTTTGGTTCTTTGAACTATCAGAAGAGGAATTTCAGCTCAGTGTTGTCGCCTCTTTAA 621 0.438 MAGVNTLPEERWNLFPSSAMEIALDSVDGRGENMEVHNTITDDASVHFSATRPVAVPSSGPIKVIPNPTKFTILYKGNMCVYEGIPAEKVREIMLIASVSAKSAEMKRGVPWTSLISKSPSSLLGNSTDSAKKSSIQRLQDEFPLARRQSLQRFLEKRRNRLANKAPYASSKNMADNIENNFFSEMSHFGSLNYQKRNFSSVLSPL 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4613g00014 206 Pfam tify domain 66 98 IPR010399 -
Vium4613g00014 206 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 53 175 IPR040390 -
Vium4613g00014 206 ProSiteProfiles Tify domain profile. 64 99 IPR010399 -
Vium4613g00014 206 SMART tify_2 64 99 IPR010399 -
Vium4613g00014 206 Pfam Jas motif 144 168 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4613g00014 Vium-Chr4613 109443 111855 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4613g00014 16 171 Tify Gene Family AT5G20900 35.329 1.46e-19 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vium4613g00014 tify 5.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4613g00014 K13464 - gmx:100306282 235.343