Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4613g00013 ATGTCAACTGCTGAAGCTCCTCAATTCCAAGAAGCAGCGCGATGCGTTGTCTGCAATTGCGGTTTCAACACCTTCAGAAGAAGGCATCACTGTCGATCCTGTGGGAGAACATTATGCAGTGAACATTCATCAAATCAAATGGCTTTACCACAATTTGGCATTTACTCTAATGTCCGAGTATGTGCTGATTGTTTCAACAACTCAGGGTCTGGAAAGGATGTGCCACGGGGTTCTTTGGGCGGAGCTAACAGTGTGACGGATACAATTTCTAAATTAGATATTAATGCAAATGCTGATTCAAAATCCACACCAACTGCAGCGAGTAATCTTGTAAAAGAGTGTAAGTGTGGAATGCCACTTTGCATTTGTGAAGCTCCCTCCCCTTCCTCCTCTGATGCACCCTCCCAACAGAGGAAACCGAGCCCAGTTATTGCAGCTCCATCAAATCCTAAACCTAAGAAAACAGAAACTGCTCCGAAAAATAGAAGCTCCAGTTCAACTAGCAAATTTAGTGCTATGAATGGCACCTCAGACAGACCTCAAAGTGATTATGGAGTTAGTGGAGAGGGTTTAAGAGAGGCAATAAAAAATGGTGATATTGGTGCTGTCAAGAAACTTCTTAACGAGGGTGTGGATGCAAATTACAAGGACAAGCAAGGACTGTCTTTATTACATTTGGCTGCAGTCTTCAATCAAACTGATATAGTTTTCACTCTCATGGATTCGGGGGCAAGCCTGGAGTACAAAAATGCACAAGGAGAAACACCTTTAGATTGTGCACCAGCTACACTGCAATACAAAATGCGTAAAAAGATAGAAGAAGGTGGCGCAAGGGACTAA 840 0.431 MSTAEAPQFQEAARCVVCNCGFNTFRRRHHCRSCGRTLCSEHSSNQMALPQFGIYSNVRVCADCFNNSGSGKDVPRGSLGGANSVTDTISKLDINANADSKSTPTAASNLVKECKCGMPLCICEAPSPSSSDAPSQQRKPSPVIAAPSNPKPKKTETAPKNRSSSSTSKFSAMNGTSDRPQSDYGVSGEGLREAIKNGDIGAVKKLLNEGVDANYKDKQGLSLLHLAAVFNQTDIVFTLMDSGASLEYKNAQGETPLDCAPATLQYKMRKKIEEGGARD 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4613g00013 279 MobiDBLite consensus disorder prediction 128 143 - -
Vium4613g00013 279 ProSiteProfiles Ankyrin repeat region circular profile. 219 250 - -
Vium4613g00013 279 MobiDBLite consensus disorder prediction 159 183 - -
Vium4613g00013 279 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 9 69 IPR017455 -
Vium4613g00013 279 Gene3D - 82 277 IPR036770 -
Vium4613g00013 279 ProSiteProfiles Ankyrin repeat profile. 219 251 IPR002110 GO:0005515
Vium4613g00013 279 MobiDBLite consensus disorder prediction 127 187 - -
Vium4613g00013 279 SMART fyve_4 1 70 IPR000306 GO:0046872
Vium4613g00013 279 SMART ANK_2a 219 248 IPR002110 GO:0005515
Vium4613g00013 279 SMART ANK_2a 186 215 IPR002110 GO:0005515
Vium4613g00013 279 SUPERFAMILY FYVE/PHD zinc finger 11 68 IPR011011 -
Vium4613g00013 279 Pfam FYVE zinc finger 10 67 IPR000306 GO:0046872
Vium4613g00013 279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 69 IPR013083 -
Vium4613g00013 279 Pfam Ankyrin repeats (3 copies) 193 260 IPR002110 GO:0005515
Vium4613g00013 279 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 27 2 276 - -
Vium4613g00013 279 SUPERFAMILY Ankyrin repeat 192 266 IPR036770 -
Vium4613g00013 279 CDD FYVE_scVPS27p_like 8 65 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4613g00013 198 278 MAP Kinase Kinase Kinase AT3G58760 34.568 8.22e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4613g00013 - - gmx:100814367 446.047