Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4613g00012 ATGGGATTCTACATCGAAGACCCTCTCTCCGGCTTCACAATAGGCCAGGCCATATACGAGGCCGCTCTCATCATTGCAGTTCTCAGATGGCTCTTCTGCTTCCTCTTCAGACTCATCAACGACACAACCACAACGTCTGAAGACACCCCACCTGAATCCTGTCCTCAGACCACAAGGGAGAGGGACACCACCCTTTTGCTCACCACCTTCGGAGACATTAAGGAGAGGTTGCCACAGACCGAGGACACGTGTGCGGTTTGCCTCAGCCAGCTGGAGATGGAGGACGAGGTTCGGGAGCTCATGAACTGTTACCACGTGTTCCACAGAGAGTGCATAGACAGATGGCTGGAGCACGAGCACGAGAATCACAACCCCACGTGTCCACTCTGCAGAGCCCCTTTGCTGAGTTCTTGCTGCCACCACTACTCTGCCGCTTGTCAGCCTCCTCCTCAGCCTAGTTGGGCTGTTGAGAGACTTCTCTATCTCTTCGGCGATGATTTGCTACCTTGCTAG 513 0.5439 MGFYIEDPLSGFTIGQAIYEAALIIAVLRWLFCFLFRLINDTTTTSEDTPPESCPQTTRERDTTLLLTTFGDIKERLPQTEDTCAVCLSQLEMEDEVRELMNCYHVFHRECIDRWLEHEHENHNPTCPLCRAPLLSSCCHHYSAACQPPPQPSWAVERLLYLFGDDLLPC 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4613g00012 170 SUPERFAMILY RING/U-box 78 136 - -
Vium4613g00012 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 135 IPR013083 -
Vium4613g00012 170 ProSiteProfiles Zinc finger RING-type profile. 84 131 IPR001841 -
Vium4613g00012 170 PANTHER RING ZINC FINGER PROTEIN-RELATED 24 168 - -
Vium4613g00012 170 SMART ring_2 84 130 IPR001841 -
Vium4613g00012 170 Pfam Ring finger domain 82 131 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4613g00012 Vium-Chr4613 84396 85224 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4613g00012 1 167 C3H Transcription Factor Family AT5G20885 46.154 6.69e-44 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4613g00012 K16281 - gmx:100306203 296.204