Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4613g00006 ATGGCTGTTTCTCCAGTTAGATATCGTTCCACCCTCGCATGCTCCTTCTGCTGCCTTTTCTTTCTGGCACTTTGCTCCCCTCTCACCGCTGCCACAGACTTCGCCGGTTCAGCCTGCCTCGGGGTCTCCCCCAGCCAGTTCGCCGGCTCACTCACCCAAGTCATCACCGCCATCAAACGACTCGCGTCCATTCTCTCACGCTTCTCTATGCCATTCGCAGACTTCCGCCTCGCCACTGCCGTCGCCGACTGCCTCGACTTGTTCGACATCTCCTCCGACGTTCTCTCCTGGGCCCTCTCCGCCTCTCAGAACCCCAAAGGGAAGCATAACAGCACGGGGAACCTGAGCTCCGATTTGAGGACATGGCTAAGTGCGGTACTTTCGCATCCACAAACTTGCATGGATGGATTCGAAGGGACGAACGGATTTGTGAAGAGTTTGGTATCCGCTGGCATCGGCGAAGTGGTATCGCTGGTGGAGCAGCTTCTTGCGCAGGTGGTGCCAGTAAACGATGAATTTGAAGCCAGCCAGGAGCAATTTCCTTCGTGGATTAAACCCAGGGAAAGGAAGCTTCTGCAATCGATTGGAGTGACTCCTGATGTTGTAGTAGCTTTGGATGGGAGTGGGAACTACGCTAGGATCATGGATGCGGTCCTCGCGGCACCTGATTATAGCATGAAACGGTTTGTGATTTACATAAAGAAAGGTGTTTATTTTGAGAACGTGGAGATCAAGAAGAAGAAATGGAACATCATGATGATTGGAGATGGAATGGGCGCCACCGTGATCTCCGGTAACCGGAGTTTCATCGACGGTTGGACCACCTTCCGCTCATCTACATTCGCTGTGAGTGGCAGAGGGTTCATAGCAAGAGACGTTTCCTTTCAGAACACGGCAGGGCCTGAGAAGCACCAAGCAGTGGCGCTGAGATCAGACTCGGATCTCTCTGTGTTCTACCGATGTGGGATTTTCGGTTTCCAAGACAGCCTATACACCCACACCATGCGCCAATTCTTCAGAGAATGCAGAATAACAGGCACGGTGGACTTCATCTTCGGCGACGCCACCGCCGTCTTCCAGAACTGCTTAATACAACCGAAGAAGGGTTTGCCAAATCAGAAGAACACGATCACAGCACACGGTAGAAAAGACCCAAATGAGCCAACGGGTTTCTCATTCCAGTTCTGCAACATCACTGCAGATTCCGACCTTGCACCCGTCGTCAACACCACTCAAACGTATCTGGGCAGACCCTGGAAGAGTTACTCACGAACCGTTTTCATGCAATCGTTCATGAGTGAGGTGATAAGGGCAGAGGGGTGGTTGGAGTGGAATGGAGACTTTGCTTTGGACACATTGTATTATGCAGAGTACCTGAACACTGGGGCAGGTGCTGGCGTGGCGAACCGTGTGAAATGGACAGGGTACCATGCATTCAATGATTCAAGCCAGGTGAGTAACTTCACGGTGGCTCAGTTTATTGAGGGGAATCTCTGGTTGCCTTCCACTGGAGTAACCTACACTGCTGCATTCAAAGCTTAA 1542 0.5195 MAVSPVRYRSTLACSFCCLFFLALCSPLTAATDFAGSACLGVSPSQFAGSLTQVITAIKRLASILSRFSMPFADFRLATAVADCLDLFDISSDVLSWALSASQNPKGKHNSTGNLSSDLRTWLSAVLSHPQTCMDGFEGTNGFVKSLVSAGIGEVVSLVEQLLAQVVPVNDEFEASQEQFPSWIKPRERKLLQSIGVTPDVVVALDGSGNYARIMDAVLAAPDYSMKRFVIYIKKGVYFENVEIKKKKWNIMMIGDGMGATVISGNRSFIDGWTTFRSSTFAVSGRGFIARDVSFQNTAGPEKHQAVALRSDSDLSVFYRCGIFGFQDSLYTHTMRQFFRECRITGTVDFIFGDATAVFQNCLIQPKKGLPNQKNTITAHGRKDPNEPTGFSFQFCNITADSDLAPVVNTTQTYLGRPWKSYSRTVFMQSFMSEVIRAEGWLEWNGDFALDTLYYAEYLNTGAGAGVANRVKWTGYHAFNDSSQVSNFTVAQFIEGNLWLPSTGVTYTAAFKA 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4613g00006 513 FunFam Pectinesterase 194 511 - -
Vium4613g00006 513 CDD PMEI-like_4 14 170 - -
Vium4613g00006 513 Pfam Pectinesterase 200 497 IPR000070 GO:0030599|GO:0042545
Vium4613g00006 513 SMART PMEI_2 30 165 IPR006501 GO:0004857
Vium4613g00006 513 Gene3D - 194 511 IPR012334 -
Vium4613g00006 513 Gene3D Invertase/pectin methylesterase inhibitor family protein 26 167 IPR035513 -
Vium4613g00006 513 Pfam Plant invertase/pectin methylesterase inhibitor 52 150 IPR006501 GO:0004857
Vium4613g00006 513 PANTHER PECTINESTERASE 57 501 - -
Vium4613g00006 513 ProSitePatterns Pectinesterase signature 2. 344 353 IPR033131 -
Vium4613g00006 513 SUPERFAMILY Pectin lyase-like 196 508 IPR011050 -
Vium4613g00006 513 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 15 162 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4613g00006 Vium-Chr4613 17550 21642 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4613g00006 16 511 Carbohydrate Esterase AT3G43270 60.819 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4613g00006 K01051 - gmx:100814987 860.907