Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4613g00004 ATGGCAATTCCTAAACTTTTCCTCCTTCTTTTGGCATACTTCTTCTCACATGCCATAGCTGTTAAGTCCTCCAATGCTTTCACAATCCCAACATTCCATGCAAACCACTCTTCCTTAAATAGAACAAACTTATTTCATGAAGTCAGCTTCGGTTCCTCTAAGCTTTCCATCTCAATAAACATAAATCCAAACATCATCAACACCCTCCTTCAGTCCCTCCAAGCAGCAATATCTGATGCCACAAAACTATCTGATCTATTAAACAATGCAGGACACTCAAGCATCATAGAGAACAAAATAGGAGCAGTCCAAGACTGTAGAGAACTTCAACAATCCACCTTAGCTTCCTTAGAACGATCGCTATCAGGAATCCGTTCCCAAGACTCCAGAAAAGTAGTTGATGCAAGAACCTACCTCAGTGCAGCCCTCACCAACAAAGGCACGTGTCTGGAGAGCTTAGATTCTGCTTCGGGTACCCTTAAGCCAGTTCTGGTGAATTCTGTGATAAACTCTTACAAGCATGTCAGTGACTCTCTTTCAATGCTCCCTAAGCCTGAGAAGAAGGCTTCCCAAGGACACAAGAACCGGCGTTTGTTGTGGTTGTCAAGGGCAAACCATCGCCTCTTGGAAGGCAATGATGGGGTGCTTGTTGTAGCTGCAGATGGAACGGGGAAGTTTAGCACCATCACCGAGGCTATCAACTTTGCTCCAAACAACAGCGTTGGTAGGACAGTAATCTATGTCAAAGAAGGGACTTACGAGGAAAATGTTGAAATCCCAAGTTATAAGACCAATATTGTTCTGCTTGGCGATGGAAAGGATGTAACTTTTATCACTGGCAGCAGAAGTGTCATTGATGGCTGGACCACTTTCAGATCTGCAACTCTGGCGGTCTCTGGAGAGGGTTTTCTTGCACGTGATATTGCTTTTGAGAACAAGGCAGGGCCAGAGAAGCATCAAGCAGTTGCCTTGAGAGTGAATGCAGACTTCACTGCATTCTACAGGTGTGCCATGTATGGTTACCAAGACACTCTCTATGTTCACTCCTTTAGACAGTTCTACAGAGAGTGTGACATTTTTGGGACCATAGATTACATATTTGGGAATGCAGCGGTGGTTTTTCAAGCATGCAACATCGTGTCTAGAATGCCAATGGCAGGCCAATTCACTGTCATTACTGCACAGTCCAGAGATTCCCCTGATGAGGACACTGGCATTTCAATCCAAAACTGCTCCATTCTAGCTACCACAGACTTGTATTCCGATTCTGGTAGTGTGAAAAGCTACCTAGGAAGACCATGGAGGGTTTATTCTCGTACCGTGTATCTTGAGTCCTACATTGATGCATTTATTGAGGCAGAGGGGTGGACCCAGTGGTCTAATGATGAAGGCTTGGACACTTTGTATTATGGAGAGTATGCCAACTATGGGCCTGGTTCAGGGACAGATAACAGAGTAGATTGGGCTGGGTACCATTTAATGGATTACGACAGTGCCTACAATTTCTCAGTTTCGGAATTTATCATTGGTGACGCTTGGCTTGGGTCTACATCATTCCCTTATGACAATGGGATTTAA 1578 0.4449 MAIPKLFLLLLAYFFSHAIAVKSSNAFTIPTFHANHSSLNRTNLFHEVSFGSSKLSISININPNIINTLLQSLQAAISDATKLSDLLNNAGHSSIIENKIGAVQDCRELQQSTLASLERSLSGIRSQDSRKVVDARTYLSAALTNKGTCLESLDSASGTLKPVLVNSVINSYKHVSDSLSMLPKPEKKASQGHKNRRLLWLSRANHRLLEGNDGVLVVAADGTGKFSTITEAINFAPNNSVGRTVIYVKEGTYEENVEIPSYKTNIVLLGDGKDVTFITGSRSVIDGWTTFRSATLAVSGEGFLARDIAFENKAGPEKHQAVALRVNADFTAFYRCAMYGYQDTLYVHSFRQFYRECDIFGTIDYIFGNAAVVFQACNIVSRMPMAGQFTVITAQSRDSPDEDTGISIQNCSILATTDLYSDSGSVKSYLGRPWRVYSRTVYLESYIDAFIEAEGWTQWSNDEGLDTLYYGEYANYGPGSGTDNRVDWAGYHLMDYDSAYNFSVSEFIIGDAWLGSTSFPYDNGI 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4613g00004 525 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 64 182 IPR035513 -
Vium4613g00004 525 SMART PMEI_2 35 181 IPR006501 GO:0004857
Vium4613g00004 525 FunFam Pectinesterase 211 525 - -
Vium4613g00004 525 FunFam Pectinesterase 32 184 - -
Vium4613g00004 525 CDD PMEI-like_3 69 187 - -
Vium4613g00004 525 Pfam Plant invertase/pectin methylesterase inhibitor 72 181 IPR006501 GO:0004857
Vium4613g00004 525 Gene3D - 213 525 IPR012334 -
Vium4613g00004 525 PANTHER PECTINESTERASE 65 515 - -
Vium4613g00004 525 Pfam Pectinesterase 216 511 IPR000070 GO:0030599|GO:0042545
Vium4613g00004 525 Gene3D Invertase/pectin methylesterase inhibitor family protein 51 184 IPR035513 -
Vium4613g00004 525 ProSitePatterns Pectinesterase signature 2. 359 368 IPR033131 -
Vium4613g00004 525 NCBIfam pectinesterase inhibitor domain 64 182 IPR006501 GO:0004857
Vium4613g00004 525 SUPERFAMILY Pectin lyase-like 214 522 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4613g00004 Vium-Chr4613 14350 16641 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4613g00004 37 525 Carbohydrate Esterase AT2G26440 65.294 0.0 668
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4613g00004 - K01051 gmx:102666380 893.649