Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4613g00003 ATGGCGTTTCAGGATTTTGACCTCATCTCAGAGCGGCGGAGAAACGAGAAAAAGCAGAAGATGAGGAAGAGGATCATGATCGGCGTGGTTTCTTCCATCGTCCTCGTTGGCATGATCGGCGCAGTTCTCTTCGTCGTGGTTAAGAATGATGACACTGGCCATGGCAATACCAATGGAAAGAGCACCAACAAGGCACGTACCAGCCATTCACCACCACAGGCTCAAGGTGGCTCGGCCAAGGAGCAGGTGGCGCACACGGAGAAGATAGTGAAAATGGTGTGCAGCTCCTCCGATTTCAAGGACAAGTGTGAAGAACCTCTGAGCAAGGCCATGGAGAATGACTCCAAACTCTCGGAACCCAAAGACCTTCTCAAGGCCTACGTGAAGCTTGCAGAGGAAGAGGTTTCCAAGGCCTTCAACAAGACCCTGTCGATGAAGTTCGACACTGAAAAAGAAAAAGGAGCGTTCGAGGATTGCAAGAAGCTGTTTGAGGATGCCAAGGATGACATCGCAACCACCATCTCTGAACTATCCAAAACCGAGCTCAAGAATATCACTGACAAGAGTCCTGATCTGAACTCCTGGCTCAGTGCTGTCATTTCCTTCCAACAGACCTGCATAGATGGCTTCCCTCAAGGAAACATCAAGAGTGAACTTGGAAATCTCATGAACGATTCCAAGCAATTCATCAGCAACTCCCTTGCCATTGTCTCTCAGCTCGCATCGACTCTTTCTACATTGGAAACAGCTGCCGCCTCATCACACGGCCGATCCTTGCTGTCTCAGTTCTCCAACTCCCCAGCTGCTTCTCTCGACGAAACCGATGGCTTTCCCTCTTGGATCCACAACGATGACCGCAGGATCTTGAAGGCCGTCGATAACAAACCTCCACCTAATGTCACCGTGGCAAAAGACGGCAGTGCAAACTTCAAAAGCATCTCCGAAGCTTTGAATGCTGTCCCTGCAAAGTTTGAAGGACGGTATGTGATTTACGTCAAAGAAGGAATATACGACGAGACAGTGAAGGTTACAAAGAAAATGCAAAACATAACCATGTACGGCGATGGATCCCAAAAGACAATCGTCACCGGCAACAAAAACTTCAGGGACGGAGTCAGGACTTTCCTCACTGCAACTTTTGTGGTGGAGGGAGATGGATTCATAGGCATGGCAATGGGATTCAGAAACACGGCAGGACCCGATGGGCATCAAGCAGTGGCGGCAAGAGTGCAGGCAGATCGTGCAGTGTTTGCGAACTGTCGTTTCGAGGGGTACCAAGACACTCTATACACCCAAGCACACAGACAATTCTACAGGAGTTGCATCGTGACCGGAACAATCGACTTCATCTTCGGTGATGCGGCTGTGGTGCTCCAGAACTGCATCCTGATCATTAGGAAGCCAAACGACAACCAGCAGAACATGGTGACAGCTCAAGGGAGAGAGGACAAGCAGCAAGCGACTGGAATTGTGCTGCAGAAGTGCACAATCAAAGCCGATGACGCACTGATCCCAGTGAAGGACAAGATCAGAAGCTACCTGGGAAGGCCATGGAAGCAGTACTCAAGAACCATTGTGATGGAATCAGAAATAGGTGACGTGATTCACCCAGATGGATGGACAGCTTGGGAAGGTGATTTCGCTCTGAAAACATTGTACTATGCTGAGTATGGGAACACAGGAGCTGGTGCCTCCACCAGCGCCAGGGTGAAGTGGCCCGGTTACCAAGTTATCAGCAAGGAACAAGCTACGCAGTTCACTCCTGGCGCTTTCTTGAGAGGCACATGGCTTCAGAGCACTGGAGTGCCATCTACGCAAGGCTTGTACAACAATTAA 1836 0.5 MAFQDFDLISERRRNEKKQKMRKRIMIGVVSSIVLVGMIGAVLFVVVKNDDTGHGNTNGKSTNKARTSHSPPQAQGGSAKEQVAHTEKIVKMVCSSSDFKDKCEEPLSKAMENDSKLSEPKDLLKAYVKLAEEEVSKAFNKTLSMKFDTEKEKGAFEDCKKLFEDAKDDIATTISELSKTELKNITDKSPDLNSWLSAVISFQQTCIDGFPQGNIKSELGNLMNDSKQFISNSLAIVSQLASTLSTLETAAASSHGRSLLSQFSNSPAASLDETDGFPSWIHNDDRRILKAVDNKPPPNVTVAKDGSANFKSISEALNAVPAKFEGRYVIYVKEGIYDETVKVTKKMQNITMYGDGSQKTIVTGNKNFRDGVRTFLTATFVVEGDGFIGMAMGFRNTAGPDGHQAVAARVQADRAVFANCRFEGYQDTLYTQAHRQFYRSCIVTGTIDFIFGDAAVVLQNCILIIRKPNDNQQNMVTAQGREDKQQATGIVLQKCTIKADDALIPVKDKIRSYLGRPWKQYSRTIVMESEIGDVIHPDGWTAWEGDFALKTLYYAEYGNTGAGASTSARVKWPGYQVISKEQATQFTPGAFLRGTWLQSTGVPSTQGLYNN 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4613g00003 611 FunFam Pectinesterase 293 608 - -
Vium4613g00003 611 SUPERFAMILY Pectin lyase-like 296 607 IPR011050 -
Vium4613g00003 611 CDD PMEI-like_3 93 242 - -
Vium4613g00003 611 ProSitePatterns Pectinesterase signature 2. 443 452 IPR033131 -
Vium4613g00003 611 FunFam Pectinesterase 86 241 - -
Vium4613g00003 611 Pfam Pectinesterase 299 594 IPR000070 GO:0030599|GO:0042545
Vium4613g00003 611 SMART PMEI_2 85 236 IPR006501 GO:0004857
Vium4613g00003 611 Gene3D - 294 608 IPR012334 -
Vium4613g00003 611 NCBIfam pectinesterase inhibitor domain 83 240 IPR006501 GO:0004857
Vium4613g00003 611 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 88 240 IPR035513 -
Vium4613g00003 611 MobiDBLite consensus disorder prediction 53 83 - -
Vium4613g00003 611 Gene3D Invertase/pectin methylesterase inhibitor family protein 86 242 IPR035513 -
Vium4613g00003 611 MobiDBLite consensus disorder prediction 53 80 - -
Vium4613g00003 611 Pfam Plant invertase/pectin methylesterase inhibitor 89 236 IPR006501 GO:0004857
Vium4613g00003 611 PANTHER PECTINESTERASE 42 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4613g00003 Vium-Chr4613 11428 14136 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4613g00003 1 610 Carbohydrate Esterase AT2G26450 49.128 0.0 615
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4613g00003 - - vun:114177564 1067.76