Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4612g00002 ATGGTTGCCACTCAAAGATTGGAGTTTTCTTTGTGCAAGAAGAGGAGGGGGCTTGAATTTTTGTTTCAGATTGCAGTTGGGTGGTGGGTGGTTCTACTGTTAGTTAATCCTGTGGCGGGTCTCAGACCCTTGAGGGAGAGAACTAGGTCCTGGGATGATGAGCTGTTTACAAGAAAGGACGAGAGCAACTTAGGTCCTTTTTCACAATGGAACATAACGGGAACTTACAAAGGGACTTGGAAATTTTTGGATACCACAAATGGCTCTTCCAGATTTCCAGACATCAGAAAAACAAAGGGCAATTCTGTAATTGAGTTAGTTAGTACTCCGACAAAGATAAGTGGAGTGCATTACGTTCAGGGGGTGGTTATATTCCATGATGTGTTTGACAATGAATACGATGTCAGTGGTGCCCAAGTCAGAATAGAAGGTGTATACATATGGCCTTTTAGACAGCTTCGAATGGTTGCCAACAGTGGAAAAGAAGGGGAGTTGAATCAGAATGAAGATTACATTTTATCTAATCCATATCATCTGCTTGGAGTTTTCTCATCTCAGGTACTGCAAGATTCTTCAAGAGATAAAATGTGGAGAAGAAAACATTCTCTGATTCATGATGCGGAGAAACATTGTAATATCGAAATTGCTGCTCAGGTTTCACGCTTGCCATCATCAAATAACGAAGTTGAACATGATCATTTTCATTTAGAAGGGTTAATGGAGAGCCCCTCCGCGGATGATGATGGGGACTGCTTCTCACCATTACTGCTAAATGCAACGTCTGTCAAAATTGAGGTCTACTATAACAAAGCAGTGAACTATACCTTGATGGTTACTTTTGTTTCTTTCTTGCAAGTCCTTCTATTAATTCGTCAAATGGAGCATAGCAGCACTCAATCTGGTGCTGCTAAGGTTTCAATACTAATGATTGGTCAGCAAGCAATTATGGATGCCTATCTTTGCCTTTTACATCTCACTGCAGGAATACTAGTTGAATCCTTGTTTAATGCTTTTGCAACTGCTGCATTTTTCAAGTTTGTAGTCTTCTCAATATTTGAGATGAGATATCTCCTTGCAATCTGGAAGGCAGGTAGGCCTTTGAGTAATGGTGAAGGTTGGGAAACAATGAGGCGAGAACTTTCAGTTTTATACAGTCGTTTCTATGGGATCTTGTTGGGAGGCATTCTACTTATGTATGAGTTCCATAATTATTTGAGACCTATTCTTCTTCTTATGTACTCTTTCTGGATACCTCAGATAATCACCAATGTTATTCGCGATTCGCGTAAACCCTTGCATCCTCATTATATCTTAGGGATAACCGTCACTAGGCTGGCAATCCCATTATATATCTTTGGTTGCCCTAACAACTTCATGCGCATAGAACCAGACAAGAGCTGGTGTGTTTGTTTGGCTGTATTTATTGGACTTCAAGCTGCAATTCTCCTACTTCAGCACTATCTTGGGTCACGTTGGTTCATTCCTCGTCAGATTCTCCCTGAGAAATACAGCTATTATAGGAGGTTTGATCAGGAAACAAGACAGGCTACAGACTGTGTGATTTGCATGACAGCCATTGATCTTTCCCAGCGATCTAATGATTGCATGGTGACACCTTGTGATCATTTCTTCCACTTTGGCTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGTCCAACATGCCGGCGCCCATTACCCCCTGCCTAG 1710 0.4135 MVATQRLEFSLCKKRRGLEFLFQIAVGWWVVLLLVNPVAGLRPLRERTRSWDDELFTRKDESNLGPFSQWNITGTYKGTWKFLDTTNGSSRFPDIRKTKGNSVIELVSTPTKISGVHYVQGVVIFHDVFDNEYDVSGAQVRIEGVYIWPFRQLRMVANSGKEGELNQNEDYILSNPYHLLGVFSSQVLQDSSRDKMWRRKHSLIHDAEKHCNIEIAAQVSRLPSSNNEVEHDHFHLEGLMESPSADDDGDCFSPLLLNATSVKIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSSTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKAGRPLSNGEGWETMRRELSVLYSRFYGILLGGILLMYEFHNYLRPILLLMYSFWIPQIITNVIRDSRKPLHPHYILGITVTRLAIPLYIFGCPNNFMRIEPDKSWCVCLAVFIGLQAAILLLQHYLGSRWFIPRQILPEKYSYYRRFDQETRQATDCVICMTAIDLSQRSNDCMVTPCDHFFHFGCLQRWMDIKMECPTCRRPLPPA 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4612g00002 569 ProSiteProfiles Zinc finger RING-type profile. 519 563 IPR001841 -
Vium4612g00002 569 CDD RING-H2_TUL1-like 513 568 - -
Vium4612g00002 569 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 505 569 IPR013083 -
Vium4612g00002 569 SUPERFAMILY RING/U-box 501 568 - -
Vium4612g00002 569 SMART ringv_2 518 563 IPR011016 GO:0008270
Vium4612g00002 569 PANTHER RING ZINC FINGER PROTEIN 120 568 - -
Vium4612g00002 569 SMART ring_2 519 562 IPR001841 -
Vium4612g00002 569 FunFam E3 ubiquitin-protein ligase, putative 505 569 - -
Vium4612g00002 569 Pfam Ring finger domain 518 563 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4612g00002 Vium-Chr4612 7 9837 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4612g00002 512 568 C3H Transcription Factor Family AT2G17450 35.088 2.96e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4612g00002 K23788 - gmx:100780140 1080.47