Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4612g00001 ATGGTTGCCACTCAAAGATTGGAGTTTTCTTTGTGCAAGAAGAGGAGGGGGCTTGAATTTTTGTTTCAGATTGCAGTTGGGTGGTGGGTGGTTCTACTGTTAGTTAATCCTGTGGCGGGTCTCAGACCCTTGAGGGAGAGAACTAGGTCCTGGGATGATGAGCAGCTGTTTACAAGAAAGGACGAGAGCAACTTAGGTCCTTTTTCACAATGGAACATAACGGGAACTTACAAAGGGACTTGGAAATTTTTGGATACCACAAATGGCTCTTCCAGATTTCCAGACATCAGAAAAACAAAGGGCAATTCTGTAATTGAGTTAGTTAGTACTCCGACAAAGATAAGTGGAGTGCATTACGTTCAGGGGGTGGTTATATTCCATGATGTGTTTGACAATGAATACGATGTCAGTGGTGCCCAAGTCAGAATAGAAGGTGTATACATATGGCCTTTTAGACAGCTTCGAATGGTTGCCAACAGTGGAAAAGAAGGGGAGTTGAATCAGAATGAAGATTACATTTTATCTAATCCATATCATCTGCTTGGAGTTTTCTCATCTCAGGTACTGCAAGATTCTTCAAGAGATAAAATGTGGAGAAGAAAACATTCTCTGATTCATGATGCGGAGAAACATTGTAATATCGAAATTGCTGCTCAGGTTTCACGCTTGCCATCATCAAATAACGAAGTTGAACATGATCATTTTCATTTAGAAGGGTTAATGGAGAGCCCCTCCGCGGATGATGATGGGGACTGCTTCTCACCATTACTGCTAAATGCAACGTCTGTCAAAATTGAGGTCTACTATAACAAAGCAGTGAACTATACCTTGATGGTTACTTTTGTTTCTTTCTTGCAAGTCCTTCTATTAATTCGTCAAATGGAGCATAGCAGCACTCAATCTGGTGCTGCTAAGGTTTCAATACTAATGATTGGTCAGCAAGCAATTATGGATGCCTATCTTTGCCTTTTACATCTCACTGCAGGAATACTAGTTGAATCCTTGTTTAATGCTTTTGCAACTGCTGCATTTTTCAAGTTTGTAGTCTTCTCAATATTTGAGATGAGATATCTCCTTGCAATCTGGAAGGCAGGTAGGCCTTTGAGTAATGGTGAAGGTTGGGAAACAATGAGGCGAGAACTTTCAGTTTTATACAGTCGTTTCTATGGGATCTTGTTGGGAGGCATTCTACTTATGTATGAGTTCCATAATTATTTGAGACCTATTCTTCTTCTTATGTACTCTTTCTGGATACCTCAGATAATCACCAATGTTATTCGCGATTCGCGTAAACCCTTGCATCCTCATTATATCTTAGGGATAACCGTCACTAGGCTGGCAATCCCATTATATATCTTTGGTTGCCCTAACAACTTCATGCGCATAGAACCAGACAAGAGCTGGTGTGTTTGTTTGGCTGTATTTATTGGACTTCAAGCTGCAATTCTCCTACTTCAGCACTATCTTGGGTCACGTTGGTTCATTCCTCGTCAGATTCTCCCTGAGAAATACAGCTATTATAGGAGGTTTGATCAGGAAACAAGACAGGCTACAGACTGTGTGATTTGCATGACAGCCATTGATCTTTCCCAGCGATCTAATGATTGCATGGTGACACCTTGTGATCATTTCTTCCACTTTGGCTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGTCCAACATGCCGGCGCCCATTACCCCCTGCCTAG 1713 0.4139 MVATQRLEFSLCKKRRGLEFLFQIAVGWWVVLLLVNPVAGLRPLRERTRSWDDEQLFTRKDESNLGPFSQWNITGTYKGTWKFLDTTNGSSRFPDIRKTKGNSVIELVSTPTKISGVHYVQGVVIFHDVFDNEYDVSGAQVRIEGVYIWPFRQLRMVANSGKEGELNQNEDYILSNPYHLLGVFSSQVLQDSSRDKMWRRKHSLIHDAEKHCNIEIAAQVSRLPSSNNEVEHDHFHLEGLMESPSADDDGDCFSPLLLNATSVKIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSSTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKAGRPLSNGEGWETMRRELSVLYSRFYGILLGGILLMYEFHNYLRPILLLMYSFWIPQIITNVIRDSRKPLHPHYILGITVTRLAIPLYIFGCPNNFMRIEPDKSWCVCLAVFIGLQAAILLLQHYLGSRWFIPRQILPEKYSYYRRFDQETRQATDCVICMTAIDLSQRSNDCMVTPCDHFFHFGCLQRWMDIKMECPTCRRPLPPA 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4612g00001 570 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 506 570 IPR013083 -
Vium4612g00001 570 SUPERFAMILY RING/U-box 502 569 - -
Vium4612g00001 570 SMART ringv_2 519 564 IPR011016 GO:0008270
Vium4612g00001 570 FunFam E3 ubiquitin-protein ligase, putative 506 570 - -
Vium4612g00001 570 CDD RING-H2_TUL1-like 514 569 - -
Vium4612g00001 570 ProSiteProfiles Zinc finger RING-type profile. 520 564 IPR001841 -
Vium4612g00001 570 SMART ring_2 520 563 IPR001841 -
Vium4612g00001 570 Pfam Ring finger domain 519 564 IPR001841 -
Vium4612g00001 570 PANTHER RING ZINC FINGER PROTEIN 122 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4612g00001 Vium-Chr4612 7 9837 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4612g00001 513 569 C3H Transcription Factor Family AT2G17450 35.088 2.96e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4612g00001 K23788 - gmx:100780140 1084.32