Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4607g00020 ATGTCGCGACATTACTATTTGGTTGTCGAGGACCAAGTGATCGACAACACATCATCTTTAAGAAGGCCTCGTATTGGTTCAACTGTTACCAGGGAAGCGAGGAGACGCGAATTGGGAACCATTAGATTAAAGAGAATCCTACGGCGCTTGACGATTAAACGGTTTGTCTTCTTCAACACGATTCACAGGGGAATTAATTCACTTTTGCAGAAGAACAGAAACAGTGTGAACCGTGACATACTGGGAGCAACTGAGTTAAGAGGACCAGTTAACTACAAATATAATGATTTGAAAGCTGCAACTAAAAATTTCAGTGCTGAAAATAAACTTGGAGAAGGAGGTTTTGGTGCTGTATACAAGGGTACTCTAAAAAATGGAAAAATTGTTGCCATAAAGAAATTAGTGTTGGGAAAATCAAGCAAGATGGAGGATGATTTTGAAGGTGAAGTGAAACTTATAAGCAATGTTCATCATCGGAATCTCGTTAGACTTCTTGGTTGCTGCAGTAAAGGGGAAGAGAGAATTCTGGTATACGAGTACATGGCAAATAGTAGCCTTGACAGATTCTTATTTGGTGCTAAAGGTTCCCTCAATTGGCAACAACGTTACGATATAATTTTGGGCACAGCAAGAGGACTAGCATATTTACATGAAGAGTTCCATGTGTCCATCATACACAGAGATATAAAGACAGGCAATATCTTGCTAGATGATGATCTTCAACCCAAAATTGCTGATTTTGGTTTGGCAAGGCTTCTGCCAGGGGATCGTTCCCATCTCAGCACAAAATTTGCAGGAACATTGGGATACACAGCACCTGAGTATGCAATGAATGGTCAATTATCAGAGAAGGCTGATACCTACAGCTATGGTATTGTAGTTCTAGAAATTATAAGTGGTCAAAAGAGTACTGATGTGAAGAATGAGGAGGAATGTCGTGAATACCTTCTTCAACGAGCTTGGAAACTGTATGAGAGAGGCCTGCAGTTGGAGCTTGTGGACGAGGCCATAGACCCTAATGAGTATGATGCAGAAGAAGTAAAGAAAATCATAGAAATTGCGTTGTTGTGCACTCAGGCATCTGCAGCAAGTAGGCCAACAATGTCTGAAGTAGTAGTGCTACTCAAAAGCAAGAGCTTAATGGAGCACATGCGACCAACTATGCCTGTGTTTGTTGACGCCAATATGATAAATAGGGAAGGCAACTCTGCTAGTTCATCTAATGCCACTGTCTCCATTTCTGTTCTATCAGCTCGATGA 1260 0.4111 MSRHYYLVVEDQVIDNTSSLRRPRIGSTVTREARRRELGTIRLKRILRRLTIKRFVFFNTIHRGINSLLQKNRNSVNRDILGATELRGPVNYKYNDLKAATKNFSAENKLGEGGFGAVYKGTLKNGKIVAIKKLVLGKSSKMEDDFEGEVKLISNVHHRNLVRLLGCCSKGEERILVYEYMANSSLDRFLFGAKGSLNWQQRYDIILGTARGLAYLHEEFHVSIIHRDIKTGNILLDDDLQPKIADFGLARLLPGDRSHLSTKFAGTLGYTAPEYAMNGQLSEKADTYSYGIVVLEIISGQKSTDVKNEEECREYLLQRAWKLYERGLQLELVDEAIDPNEYDAEEVKKIIEIALLCTQASAASRPTMSEVVVLLKSKSLMEHMRPTMPVFVDANMINREGNSASSSNATVSISVLSAR 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4607g00020 419 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 70 403 - -
Vium4607g00020 419 Gene3D Transferase(Phosphotransferase) domain 1 181 391 - -
Vium4607g00020 419 SMART serkin_6 104 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4607g00020 419 CDD STKc_IRAK 110 376 - -
Vium4607g00020 419 Pfam Protein kinase domain 105 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4607g00020 419 ProSiteProfiles Protein kinase domain profile. 104 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4607g00020 419 SUPERFAMILY Protein kinase-like (PK-like) 92 399 IPR011009 -
Vium4607g00020 419 FunFam Cysteine-rich receptor-like protein kinase 2 181 383 - -
Vium4607g00020 419 Gene3D Phosphorylase Kinase; domain 1 66 180 - -
Vium4607g00020 419 ProSitePatterns Protein kinases ATP-binding region signature. 110 133 IPR017441 GO:0005524
Vium4607g00020 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Vium4607g00020 419 FunFam Cysteine-rich receptor-like protein kinase 2 70 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4607g00020 Vium-Chr4607 76974 79598 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4607g00020 89 375 Receptor kinase-like Gene Family AT1G56120 55.208 3.23e-104 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium4607g00020 Pkinase 3.9e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4607g00020 - - gmx:100793189 608.216