Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4607g00018 ATGATGCTGCAACTTAAGGTTGTGGCCTTGATTTTGATATGGTGGAGCAGTAATGCTGTTGAAGATGCAGTTGCAGGCCCAGATACACATTTAGTAAACATAGGGTGCAGCTCGTTCAATGCTTCCGATTTGCGTAGCTTCTTTGCAAATATCAATGAAACCTTTTCAGACATGAGAGAAGAGATTAGGAATCAAAGCAAGCACTTTGGAACAGTACAGAAAGCAAGAGAACAAGTGCTGACATACGCTATGTTTCAGTGCAGAAACTATCTCTCGAAAAATGACTGTCTTTCTTGCTTCAACACTGCCACCACCCAGATCCGCAACTGCTCCAACGGCAACGGCGCCAGAGTCATCTACGATGGCTGCTTCCTCAGATATGAGAGTAACAGGTTCTACGATCAGACAAACGAAATTGGCAGTGGGGTATCATGTGGGAACATAAGTTCAACTGTCACTGATTTTAGAGCAGCTGGACAACAAGCCCTAATGGACCTCCAAACAGCAGTACCCAAAACTGGAGATTTTTATGCAGCTACGAAGACACTGGTGGCTGGTGGTAGTGCAGTTTATGCTGTTGCACAGTGTGTTGAAACTGCCACTCAGATTAATTGTCAGAATTGCATGCAAGTTGGATACAACAACTTACAAAGTTGTCTTCCCAACACAGAGGGTAGAGCCTATGATGCTGGCTGTTTCCTGAGATACTCCACCACACCTTTCTTTGCTGATAATCAGACTATTAATATTGCACCCTATTTGAAAAAAGGAAATTCAAGAAAGAAGTGGGGAATTATAGGCGGTGCTACAGGAGGTGTTGTTCTTCTTCTTTTGTTGTTTGGCTGGAGAATGTCAAGAAAAAGAAACCAGATTCCCAGAGGTGACATATTGGGAGCGACTGAGTTGAAAGGTCCAGTTAACTACAAGTATAATGATTTGAAAGCAGCAACCAAAAATTTCAGTGCTGAAAACAAACTTGGAGAAGGAGGTTTTGGTGATGTATACAAGCAGGGTACTCTGAAAAATGGAAAAGTCGTTGCCGTAAAAAAGCTAGTTTTGGGGAAATCAAGCAACATGGAGGATAATTTTGAAGGTGAAGTGAAGCTTATAAGCAATGTTCATCACAGAAATCTCGTTAGGCTTCTTGGTTGCTGCAGCAAAAGCCAAGAAAGAATCTTAGTTTATGAATACATGGCAAATAAAAGTCTTGACAAATTCTTATTCGGTAACAAAAAGGGTTCCCTCAATTGGAAACAACGCTATGATATAATATTAGGCACAGCAAGAGGACTGGCATATCTGCATGAAGAGTTCCACGTCTCCATCATACATAGAGATATCAAGACTGCTAACATCCTTCTAGATGATGTTTTTCAGCCCAAAATTGCTGATTTTGGGTTGGCAAGGCTTCTCCCAGAGGATCGTTCTCATCTTAGCACAAAATTTGCTGGAACTTTGGGATACACAGCACCTGAGTATGCAATGCATGGTCAATTATCAGAGAAGGCTGATACCTACAGCTATGGTATTGTAGTCCTAGAAATAGTAAGTGGCCAAAAGAGTACAGATGTGAAGAATGATGAGGATGGTGAATACCTTCTTCGACGAGCATGGAAACTGCATGAAAGAGGCATGTACTTGGACCTGATAGACAAGGCAATAGACCCTAATGAATATGACGTAGAAGAAGTGCAAAAAATCATAGAAATTGCTTTGTTATGCACTCAGGCTTCAGCTTCAACGAGGCCTACAATGACTGAAGTGGTAATGCTACTGAAAAGCAAGAACTTATTGGCGCACCTTCGACCAACTATGCCTGTGTTTGTTGAAACAAATATGATCCCTCGGGAAGGCAACTCTACCAGTTCATCTAATGCTACTGCCTCCATTTCTGTTCCCTCAGCTCGATGA 1911 0.4192 MMLQLKVVALILIWWSSNAVEDAVAGPDTHLVNIGCSSFNASDLRSFFANINETFSDMREEIRNQSKHFGTVQKAREQVLTYAMFQCRNYLSKNDCLSCFNTATTQIRNCSNGNGARVIYDGCFLRYESNRFYDQTNEIGSGVSCGNISSTVTDFRAAGQQALMDLQTAVPKTGDFYAATKTLVAGGSAVYAVAQCVETATQINCQNCMQVGYNNLQSCLPNTEGRAYDAGCFLRYSTTPFFADNQTINIAPYLKKGNSRKKWGIIGGATGGVVLLLLLFGWRMSRKRNQIPRGDILGATELKGPVNYKYNDLKAATKNFSAENKLGEGGFGDVYKQGTLKNGKVVAVKKLVLGKSSNMEDNFEGEVKLISNVHHRNLVRLLGCCSKSQERILVYEYMANKSLDKFLFGNKKGSLNWKQRYDIILGTARGLAYLHEEFHVSIIHRDIKTANILLDDVFQPKIADFGLARLLPEDRSHLSTKFAGTLGYTAPEYAMHGQLSEKADTYSYGIVVLEIVSGQKSTDVKNDEDGEYLLRRAWKLHERGMYLDLIDKAIDPNEYDVEEVQKIIEIALLCTQASASTRPTMTEVVMLLKSKNLLAHLRPTMPVFVETNMIPREGNSTSSSNATASISVPSAR 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4607g00018 636 FunFam Cysteine-rich receptor-like protein kinase 2 398 600 - -
Vium4607g00018 636 ProSiteProfiles Protein kinase domain profile. 320 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4607g00018 636 Pfam Protein kinase domain 321 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4607g00018 636 FunFam Cysteine-rich receptor-like protein kinase 2 140 241 - -
Vium4607g00018 636 Gene3D Phosphorylase Kinase; domain 1 287 397 - -
Vium4607g00018 636 FunFam Cysteine-rich receptor-like protein kinase 2 28 132 - -
Vium4607g00018 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 442 454 IPR008271 GO:0004672|GO:0006468
Vium4607g00018 636 CDD STKc_IRAK 326 593 - -
Vium4607g00018 636 SMART serkin_6 320 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4607g00018 636 Gene3D Transferase(Phosphotransferase) domain 1 398 601 - -
Vium4607g00018 636 Gene3D - 139 241 IPR038408 -
Vium4607g00018 636 Gene3D - 28 132 IPR038408 -
Vium4607g00018 636 MobiDBLite consensus disorder prediction 615 636 - -
Vium4607g00018 636 ProSiteProfiles Gnk2-homologous domain profile. 136 241 IPR002902 -
Vium4607g00018 636 FunFam Cysteine-rich receptor-like protein kinase 2 285 397 - -
Vium4607g00018 636 SUPERFAMILY Protein kinase-like (PK-like) 305 615 IPR011009 -
Vium4607g00018 636 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 82 618 - -
Vium4607g00018 636 ProSiteProfiles Gnk2-homologous domain profile. 29 132 IPR002902 -
Vium4607g00018 636 Pfam Salt stress response/antifungal 151 238 IPR002902 -
Vium4607g00018 636 Pfam Salt stress response/antifungal 40 129 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4607g00018 Vium-Chr4607 69758 73671 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4607g00018 2 634 Receptor kinase-like Gene Family AT1G70520 35.866 1.43e-125 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium4607g00018 Pkinase 3.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4607g00018 - - gmx:100801131 970.304