Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium4607g00017 | ATGATGCTGCAACTTAAGGTTGTGGCCTTGATTTTGATATGGTGGAGCAGTAATGCTGTTGAAGATGCAGTTGCAGGCCCAGATACACATTTAGTAAACATAGGGTGCAGCTCGTTCAATGCTTCCGATTTGCGTAGCTTCTTTGCAAATATCAATGAAACCTTTTCAGACATGAGAGAAGAGATTAGGAATCAAAGCAAGCACTTTGGAACAGTACAGAAAGCAAGAGAACAAGTGCTGACATACGCTATGTTTCAGTGCAGAAACTATCTCTCGAAAAATGACTGTCTTTCTTGCTTCAACACTGCCACCACCCAGATCCGCAACTGCTCCAACGGCAACGGCGCCAGAGTCATCTACGATGGCTGCTTCCTCAGATATGAGAGTAACAGGTTCTACGATCAGACAAACGAAATTGGCAGTGGGGTATCATGTGGGAACATAAGTTCAACTGTCACTGATTTTAGAGCAGCTGGACAACAAGCCCTAATGGACCTCCAAACAGCAGTACCCAAAACTGGAGATTTTTATGCAGCTACGAAGACACTGGTGGCTGGTGGTAGTGCAGTTTATGCTGTTGCACAGTGTGTTGAAACTGCCACTCAGATTAATTGTCAGAATTGCATGCAAGTTGGATACAACAACTTACAAAGTTGTCTTCCCAACACAGAGGGTAGAGCCTATGATGCTGGCTGTTTCCTGAGATACTCCACCACACCTTTCTTTGCTGATAATCAGACTATTAATATTGCACCCTATTTGAAAAAAGGAAATTCAAGAAAGAAGTGGGGAATTATAGGCGGTGCTACAGGAGGTGTTGTTCTTCTTCTTTTGTTGTTTGGCTGGAGAATGTCAAGAAAAAGAAACCAGATTCCCAGAGGTGACATATTGGGAGCGACTGAGTTGAAAGGTCCAGTTAACTACAAGTATAATGATTTGAAAGCAGCAACCAAAAATTTCAGTGCTGAAAACAAACTTGGAGAAGGAGGTTTTGGTGATGTATACAAGGGTACTCTGAAAAATGGAAAAGTCGTTGCCGTAAAAAAGCTAGTTTTGGGGAAATCAAGCAACATGGAGGATAATTTTGAAGGTGAAGTGAAGCTTATAAGCAATGTTCATCACAGAAATCTCGTTAGGCTTCTTGGTTGCTGCAGCAAAAGCCAAGAAAGAATCTTAGTTTATGAATACATGGCAAATAAAAGTCTTGACAAATTCTTATTCGGTAACAAAAAGGGTTCCCTCAATTGGAAACAACGCTATGATATAATATTAGGCACAGCAAGAGGACTGGCATATCTGCATGAAGAGTTCCACGTCTCCATCATACATAGAGATATCAAGACTGCTAACATCCTTCTAGATGATGTTTTTCAGCCCAAAATTGCTGATTTTGGGTTGGCAAGGCTTCTCCCAGAGGATCGTTCTCATCTTAGCACAAAATTTGCTGGAACTTTGGGATACACAGCACCTGAGTATGCAATGCATGGTCAATTATCAGAGAAGGCTGATACCTACAGCTATGGTATTGTAGTCCTAGAAATAGTAAGTGGCCAAAAGAGTACAGATGTGAAGAATGATGAGGATGGTGAATACCTTCTTCGACGAGCATGGAAACTGCATGAAAGAGGCATGTACTTGGACCTGATAGACAAGGCAATAGACCCTAATGAATATGACGTAGAAGAAGTGCAAAAAATCATAGAAATTGCTTTGTTATGCACTCAGGCTTCAGCTTCAACGAGGCCTACAATGACTGAAGTGGTAATGCTACTGAAAAGCAAGAACTTATTGGCGCACCTTCGACCAACTATGCCTGTGTTTGTTGAAACAAATATGATCCCTCGGGAAGGCAACTCTACCAGTTCATCTAATGCTACTGCCTCCATTTCTGTTCCCTCAGCTCGATGA | 1908 | 0.4188 | MMLQLKVVALILIWWSSNAVEDAVAGPDTHLVNIGCSSFNASDLRSFFANINETFSDMREEIRNQSKHFGTVQKAREQVLTYAMFQCRNYLSKNDCLSCFNTATTQIRNCSNGNGARVIYDGCFLRYESNRFYDQTNEIGSGVSCGNISSTVTDFRAAGQQALMDLQTAVPKTGDFYAATKTLVAGGSAVYAVAQCVETATQINCQNCMQVGYNNLQSCLPNTEGRAYDAGCFLRYSTTPFFADNQTINIAPYLKKGNSRKKWGIIGGATGGVVLLLLLFGWRMSRKRNQIPRGDILGATELKGPVNYKYNDLKAATKNFSAENKLGEGGFGDVYKGTLKNGKVVAVKKLVLGKSSNMEDNFEGEVKLISNVHHRNLVRLLGCCSKSQERILVYEYMANKSLDKFLFGNKKGSLNWKQRYDIILGTARGLAYLHEEFHVSIIHRDIKTANILLDDVFQPKIADFGLARLLPEDRSHLSTKFAGTLGYTAPEYAMHGQLSEKADTYSYGIVVLEIVSGQKSTDVKNDEDGEYLLRRAWKLHERGMYLDLIDKAIDPNEYDVEEVQKIIEIALLCTQASASTRPTMTEVVMLLKSKNLLAHLRPTMPVFVETNMIPREGNSTSSSNATASISVPSAR | 635 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium4607g00017 | 635 | Gene3D | Phosphorylase Kinase; domain 1 | 287 | 396 | - | - | |
Vium4607g00017 | 635 | ProSiteProfiles | Protein kinase domain profile. | 320 | 607 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vium4607g00017 | 635 | ProSitePatterns | Protein kinases ATP-binding region signature. | 326 | 349 | IPR017441 | GO:0005524 | |
Vium4607g00017 | 635 | SUPERFAMILY | Protein kinase-like (PK-like) | 305 | 614 | IPR011009 | - | |
Vium4607g00017 | 635 | FunFam | Cysteine-rich receptor-like protein kinase 2 | 140 | 241 | - | - | |
Vium4607g00017 | 635 | FunFam | Cysteine-rich receptor-like protein kinase 2 | 28 | 132 | - | - | |
Vium4607g00017 | 635 | PANTHER | CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 | 82 | 617 | - | - | |
Vium4607g00017 | 635 | MobiDBLite | consensus disorder prediction | 614 | 635 | - | - | |
Vium4607g00017 | 635 | Pfam | Protein kinase domain | 321 | 588 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vium4607g00017 | 635 | Gene3D | - | 139 | 241 | IPR038408 | - | |
Vium4607g00017 | 635 | Gene3D | - | 28 | 132 | IPR038408 | - | |
Vium4607g00017 | 635 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 441 | 453 | IPR008271 | GO:0004672|GO:0006468 | |
Vium4607g00017 | 635 | ProSiteProfiles | Gnk2-homologous domain profile. | 136 | 241 | IPR002902 | - | |
Vium4607g00017 | 635 | FunFam | Cysteine-rich receptor-like protein kinase 2 | 397 | 599 | - | - | |
Vium4607g00017 | 635 | CDD | STKc_IRAK | 326 | 592 | - | - | |
Vium4607g00017 | 635 | ProSiteProfiles | Gnk2-homologous domain profile. | 29 | 132 | IPR002902 | - | |
Vium4607g00017 | 635 | Gene3D | Transferase(Phosphotransferase) domain 1 | 397 | 600 | - | - | |
Vium4607g00017 | 635 | SMART | serkin_6 | 320 | 597 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vium4607g00017 | 635 | Pfam | Salt stress response/antifungal | 151 | 238 | IPR002902 | - | |
Vium4607g00017 | 635 | Pfam | Salt stress response/antifungal | 40 | 129 | IPR002902 | - | |
Vium4607g00017 | 635 | FunFam | Cysteine-rich receptor-like protein kinase 2 | 285 | 396 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium4607g00017 | Vium-Chr4607 | 64878 | 68790 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium4607g00017 | 2 | 633 | Receptor kinase-like Gene Family | AT1G70520 | 35.921 | 2.15e-127 | 388 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_DLSV | Vium4607g00017 | Pkinase | 2.2e-50 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium4607g00017 | - | - | gmx:100801131 | 974.926 |