Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4607g00017 ATGATGCTGCAACTTAAGGTTGTGGCCTTGATTTTGATATGGTGGAGCAGTAATGCTGTTGAAGATGCAGTTGCAGGCCCAGATACACATTTAGTAAACATAGGGTGCAGCTCGTTCAATGCTTCCGATTTGCGTAGCTTCTTTGCAAATATCAATGAAACCTTTTCAGACATGAGAGAAGAGATTAGGAATCAAAGCAAGCACTTTGGAACAGTACAGAAAGCAAGAGAACAAGTGCTGACATACGCTATGTTTCAGTGCAGAAACTATCTCTCGAAAAATGACTGTCTTTCTTGCTTCAACACTGCCACCACCCAGATCCGCAACTGCTCCAACGGCAACGGCGCCAGAGTCATCTACGATGGCTGCTTCCTCAGATATGAGAGTAACAGGTTCTACGATCAGACAAACGAAATTGGCAGTGGGGTATCATGTGGGAACATAAGTTCAACTGTCACTGATTTTAGAGCAGCTGGACAACAAGCCCTAATGGACCTCCAAACAGCAGTACCCAAAACTGGAGATTTTTATGCAGCTACGAAGACACTGGTGGCTGGTGGTAGTGCAGTTTATGCTGTTGCACAGTGTGTTGAAACTGCCACTCAGATTAATTGTCAGAATTGCATGCAAGTTGGATACAACAACTTACAAAGTTGTCTTCCCAACACAGAGGGTAGAGCCTATGATGCTGGCTGTTTCCTGAGATACTCCACCACACCTTTCTTTGCTGATAATCAGACTATTAATATTGCACCCTATTTGAAAAAAGGAAATTCAAGAAAGAAGTGGGGAATTATAGGCGGTGCTACAGGAGGTGTTGTTCTTCTTCTTTTGTTGTTTGGCTGGAGAATGTCAAGAAAAAGAAACCAGATTCCCAGAGGTGACATATTGGGAGCGACTGAGTTGAAAGGTCCAGTTAACTACAAGTATAATGATTTGAAAGCAGCAACCAAAAATTTCAGTGCTGAAAACAAACTTGGAGAAGGAGGTTTTGGTGATGTATACAAGGGTACTCTGAAAAATGGAAAAGTCGTTGCCGTAAAAAAGCTAGTTTTGGGGAAATCAAGCAACATGGAGGATAATTTTGAAGGTGAAGTGAAGCTTATAAGCAATGTTCATCACAGAAATCTCGTTAGGCTTCTTGGTTGCTGCAGCAAAAGCCAAGAAAGAATCTTAGTTTATGAATACATGGCAAATAAAAGTCTTGACAAATTCTTATTCGGTAACAAAAAGGGTTCCCTCAATTGGAAACAACGCTATGATATAATATTAGGCACAGCAAGAGGACTGGCATATCTGCATGAAGAGTTCCACGTCTCCATCATACATAGAGATATCAAGACTGCTAACATCCTTCTAGATGATGTTTTTCAGCCCAAAATTGCTGATTTTGGGTTGGCAAGGCTTCTCCCAGAGGATCGTTCTCATCTTAGCACAAAATTTGCTGGAACTTTGGGATACACAGCACCTGAGTATGCAATGCATGGTCAATTATCAGAGAAGGCTGATACCTACAGCTATGGTATTGTAGTCCTAGAAATAGTAAGTGGCCAAAAGAGTACAGATGTGAAGAATGATGAGGATGGTGAATACCTTCTTCGACGAGCATGGAAACTGCATGAAAGAGGCATGTACTTGGACCTGATAGACAAGGCAATAGACCCTAATGAATATGACGTAGAAGAAGTGCAAAAAATCATAGAAATTGCTTTGTTATGCACTCAGGCTTCAGCTTCAACGAGGCCTACAATGACTGAAGTGGTAATGCTACTGAAAAGCAAGAACTTATTGGCGCACCTTCGACCAACTATGCCTGTGTTTGTTGAAACAAATATGATCCCTCGGGAAGGCAACTCTACCAGTTCATCTAATGCTACTGCCTCCATTTCTGTTCCCTCAGCTCGATGA 1908 0.4188 MMLQLKVVALILIWWSSNAVEDAVAGPDTHLVNIGCSSFNASDLRSFFANINETFSDMREEIRNQSKHFGTVQKAREQVLTYAMFQCRNYLSKNDCLSCFNTATTQIRNCSNGNGARVIYDGCFLRYESNRFYDQTNEIGSGVSCGNISSTVTDFRAAGQQALMDLQTAVPKTGDFYAATKTLVAGGSAVYAVAQCVETATQINCQNCMQVGYNNLQSCLPNTEGRAYDAGCFLRYSTTPFFADNQTINIAPYLKKGNSRKKWGIIGGATGGVVLLLLLFGWRMSRKRNQIPRGDILGATELKGPVNYKYNDLKAATKNFSAENKLGEGGFGDVYKGTLKNGKVVAVKKLVLGKSSNMEDNFEGEVKLISNVHHRNLVRLLGCCSKSQERILVYEYMANKSLDKFLFGNKKGSLNWKQRYDIILGTARGLAYLHEEFHVSIIHRDIKTANILLDDVFQPKIADFGLARLLPEDRSHLSTKFAGTLGYTAPEYAMHGQLSEKADTYSYGIVVLEIVSGQKSTDVKNDEDGEYLLRRAWKLHERGMYLDLIDKAIDPNEYDVEEVQKIIEIALLCTQASASTRPTMTEVVMLLKSKNLLAHLRPTMPVFVETNMIPREGNSTSSSNATASISVPSAR 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4607g00017 635 Gene3D Phosphorylase Kinase; domain 1 287 396 - -
Vium4607g00017 635 ProSiteProfiles Protein kinase domain profile. 320 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4607g00017 635 ProSitePatterns Protein kinases ATP-binding region signature. 326 349 IPR017441 GO:0005524
Vium4607g00017 635 SUPERFAMILY Protein kinase-like (PK-like) 305 614 IPR011009 -
Vium4607g00017 635 FunFam Cysteine-rich receptor-like protein kinase 2 140 241 - -
Vium4607g00017 635 FunFam Cysteine-rich receptor-like protein kinase 2 28 132 - -
Vium4607g00017 635 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 82 617 - -
Vium4607g00017 635 MobiDBLite consensus disorder prediction 614 635 - -
Vium4607g00017 635 Pfam Protein kinase domain 321 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4607g00017 635 Gene3D - 139 241 IPR038408 -
Vium4607g00017 635 Gene3D - 28 132 IPR038408 -
Vium4607g00017 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 441 453 IPR008271 GO:0004672|GO:0006468
Vium4607g00017 635 ProSiteProfiles Gnk2-homologous domain profile. 136 241 IPR002902 -
Vium4607g00017 635 FunFam Cysteine-rich receptor-like protein kinase 2 397 599 - -
Vium4607g00017 635 CDD STKc_IRAK 326 592 - -
Vium4607g00017 635 ProSiteProfiles Gnk2-homologous domain profile. 29 132 IPR002902 -
Vium4607g00017 635 Gene3D Transferase(Phosphotransferase) domain 1 397 600 - -
Vium4607g00017 635 SMART serkin_6 320 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4607g00017 635 Pfam Salt stress response/antifungal 151 238 IPR002902 -
Vium4607g00017 635 Pfam Salt stress response/antifungal 40 129 IPR002902 -
Vium4607g00017 635 FunFam Cysteine-rich receptor-like protein kinase 2 285 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4607g00017 Vium-Chr4607 64878 68790 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4607g00017 2 633 Receptor kinase-like Gene Family AT1G70520 35.921 2.15e-127 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium4607g00017 Pkinase 2.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4607g00017 - - gmx:100801131 974.926