Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4607g00016 ATGATGTTTGAAGTAAAGTTAATTGTCTTAACTATGATGTTGTGGAGCAGTAATATTGCAGAACACGGTGCAAAGGGTGATCCACAGACATATCTGGTAAACACTGGATGCAGCACATACAACGCTACGAACGTGCAGAGTTTCTATGCGAATATCAACGCAACATTTTCAGAGCTCAGAAGAGATATTAGCAATAACAGCAAGCACTTTGGCACAACACAAGAAGCCAGAGAAGATGTTCTCACCTATGCTATGTTTCAATGCAGAAACTATCTCTCCAAAAATGATTGTCTTTCTTGCTTCAACAACGCCTCAACCCAAATCCGCAACTGCTCCCAAGCCAACGGCGCCAGAGTCATCTACGACGGTTGCTTCCTCAGGTATGAGAGCGAGATGTTCTTCGACCAGACCGATGAACTTGGCAAGGGTGTATTATGTGGGAATAACACTTCAAATGCCGCTGGTTTTGGATTAGTCGGACAACAAGTCATCGCAGATATCCAAACAGCAACACCCAAAACTAGAGATTTTTATGCAGCAACTAAGACACAGGTGGCTAATGGAACTGCAATTTATGCTGTTGCACAGTGTGTTGAAACTGCAACCGAGGATAAATGTCTGAGTTGCATGCAAGCTGGATACAACAACTTACAAAGTTGTCTTCCCAACACAGAGGGTAGAGCTTATGATGCTGGCTGTTTCATGAGATACTCCACCACACCTTTCTTTGCTGATAATCAAACCATTGATATTGCACCCTATTTGAAAAAAGGAGATTCAAGCAGGAAGTGGATTATAATTGCTGCCAGTGTTGGAACTGTTGTTGCTCTCCTCTGTGTGTTGTTTGCATGGCGATGGTTTATAAAACCAAAGAGGGTTCCCAGAGGTGATATATTGGGAGCAACTGAGTTGAAAGGTCCAGTTAACTACAAGTATAATGATTTGAAAGCTGCAACGAAGAAATTCAGTGCTGAAAACAAACTTGGAGAAGGAGGTTTTGGTGATGTATACAAGGGTACTCTGAAGAATGGAAAAGTTGTTGCCGTAAAAAAACTAGTGTTGGGGAAATCAAGTAAGATGGAGGATGATTTTGAGGGTGAAGTGAAGCTTATAAGTAATGTTCATCATCGGAATCTTGTTAGACTTCTTGGTTGCTGCAGCAAAGGCCAAGAGAGAATCTTGGTTTATGAGTATATGGCAAATAGCAGTCTTGACAAATTCTTATTCGGTAACAAAAAAGGTTCCCTCAGTTGGAAACAACGTTATGATATAATTTTAGGCACAGCAAGGGGACTAGCATATCTGCATGAGGAATTCCACGTGTCCATCATACATAGAGATATTAAAACTTCTAATATCCTCTTGGATGATGATCTTCAACCCAAAATTGCTGATTTTGGATTGGCAAGGCTTCTGCCAGAGGATCGTTCCCATCTTAGCACAAGATTTGCTGGAACATTGGGATACACAGCACCTGAGTATGCAATCCATGGTCAATTATCAGAGAAGGCTGACACCTACAGCTATGGAATTGTAGTCCTAGAAATCGTTAGTGGTCAAAAGAGTACCGATGTGAAGGATGACGACGATGGTCGTGAATACCTACTCCAACGAACATGGAAGCTGTATGAGAGAGGAATGCACCTAGAGCTGGTGGACAAGGCCATAGACCCTAATAATTATGATGCAGAAGATGTCAAGAAAATCATAGAAATTGCATTGTTATGCACTCAGGCGTCGGCTGCAACGAGACCAACAATGTCTGAAGTAGTAGTGCTACTCAAAAGCAAGAGTTTAGTGGAGAACCTGCGACCAACTATGCCTGTGTTTGTTGAAACGAATATGAAGATTCGGGAAAGCAAGTCTAGCTCAACCAGCGGCTCTTCATCTAATGCCACTGCCTCCATTTCTGTTCTATCAGCACGATGA 1929 0.4215 MMFEVKLIVLTMMLWSSNIAEHGAKGDPQTYLVNTGCSTYNATNVQSFYANINATFSELRRDISNNSKHFGTTQEAREDVLTYAMFQCRNYLSKNDCLSCFNNASTQIRNCSQANGARVIYDGCFLRYESEMFFDQTDELGKGVLCGNNTSNAAGFGLVGQQVIADIQTATPKTRDFYAATKTQVANGTAIYAVAQCVETATEDKCLSCMQAGYNNLQSCLPNTEGRAYDAGCFMRYSTTPFFADNQTIDIAPYLKKGDSSRKWIIIAASVGTVVALLCVLFAWRWFIKPKRVPRGDILGATELKGPVNYKYNDLKAATKKFSAENKLGEGGFGDVYKGTLKNGKVVAVKKLVLGKSSKMEDDFEGEVKLISNVHHRNLVRLLGCCSKGQERILVYEYMANSSLDKFLFGNKKGSLSWKQRYDIILGTARGLAYLHEEFHVSIIHRDIKTSNILLDDDLQPKIADFGLARLLPEDRSHLSTRFAGTLGYTAPEYAIHGQLSEKADTYSYGIVVLEIVSGQKSTDVKDDDDGREYLLQRTWKLYERGMHLELVDKAIDPNNYDAEDVKKIIEIALLCTQASAATRPTMSEVVVLLKSKSLVENLRPTMPVFVETNMKIRESKSSSTSGSSSNATASISVLSAR 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4607g00016 642 FunFam Cysteine-rich receptor-like protein kinase 2 399 602 - -
Vium4607g00016 642 ProSiteProfiles Protein kinase domain profile. 322 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4607g00016 642 Pfam Protein kinase domain 323 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4607g00016 642 FunFam Cysteine-rich receptor-like protein kinase 2 141 242 - -
Vium4607g00016 642 ProSitePatterns Protein kinases ATP-binding region signature. 328 351 IPR017441 GO:0005524
Vium4607g00016 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672|GO:0006468
Vium4607g00016 642 FunFam Cysteine-rich receptor-like protein kinase 2 29 133 - -
Vium4607g00016 642 FunFam Cysteine-rich receptor-like protein kinase 2 290 398 - -
Vium4607g00016 642 SMART serkin_6 322 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4607g00016 642 Gene3D Transferase(Phosphotransferase) domain 1 399 628 - -
Vium4607g00016 642 MobiDBLite consensus disorder prediction 620 642 - -
Vium4607g00016 642 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 83 630 - -
Vium4607g00016 642 Gene3D Phosphorylase Kinase; domain 1 299 398 - -
Vium4607g00016 642 ProSiteProfiles Gnk2-homologous domain profile. 138 242 IPR002902 -
Vium4607g00016 642 Gene3D - 143 242 IPR038408 -
Vium4607g00016 642 Gene3D - 29 133 IPR038408 -
Vium4607g00016 642 Pfam Salt stress response/antifungal 151 239 IPR002902 -
Vium4607g00016 642 Pfam Salt stress response/antifungal 37 130 IPR002902 -
Vium4607g00016 642 ProSiteProfiles Gnk2-homologous domain profile. 30 133 IPR002902 -
Vium4607g00016 642 SUPERFAMILY Protein kinase-like (PK-like) 305 594 IPR011009 -
Vium4607g00016 642 CDD STKc_IRAK 328 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4607g00016 Vium-Chr4607 57008 62107 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4607g00016 2 642 Receptor kinase-like Gene Family AT1G70520 37.291 2.75e-131 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium4607g00016 Pkinase 1.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4607g00016 - - gmx:100801131 986.097