Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4603g00001 AGTGGCACGTTGTTTAACGACACCGTCGAATTCCTTTCTCCAAGAGATGCTGACGGTCACGGAACCCACACGGCGTCAACCGCGGCGGGACGCTACGTTTTCGAAGCCAGCATGGCGGGATATGCGTCTGGAGTTGCAAAGGGCGTGGCTCCCAAAGCGAGACTTGCAATGTACAAGGTGTGTTGGAAGAATTCTGGCTGCTTTGACTCTGACATTCTTGCAGCATTTGACGCTGCCGTAAACGACGGCGTCGACGTCATTTCCATGTCCATCGGCGGCGGCGATGGCATTTCCTCTCCTTACTATCTTGATCCAATTGCGATAGGGTCCTACGGTGCAGTTTCCAGAGGTGTGTTTGTGTCATCCTCGGGTGGAAATGACGGGCCCAGTGGAATGTCGGTGACCAACCTAGCACCCTGGTTGACCACTGTCGCAGCAGGTACCATTGATCGCGATTTTCCGGCGGAGGTTATACTGGGAAACGGACGAAGACTCTTCGGCGTGTCTCTCTACTCCGGAGTTCCGTTGAAGGGGAGAATGTTTCCCTTAATATATCCCGGAAAATCAGGGGTTCTTACGGATTCACTGTGCATGGAAAACTCGTTAGACCCTGACCTTGTGAAAGGGAAGATAGTGGTTTGCGACAGAGGAAGTAATCCCAGAGTTGCGAAGGGATTGGAGGTGAAGAAAGCAGGAGGAGTAGGAATGATTCTGGCTAATGGAATATCCAACGGTGAAGGACTTGTTGGAGACGCTCATCTTCTTCCCGCGTGTGCACTTGGTGCTGACTTGGGAGATGAAGTTAAAGCCTACATTTCATCCTCTGAGAACCCAAGGGCCACTATCGATTTCAAAGGAACTGTGGTGGGAATCAAACCGGCACCCGTAGTGGCGTCGTTTTCAGCGAGAGGACCCAACGGGTTGAATTTGGAAATACTTAAACCTGACTTGGCGGCCCCCGGGGTGAACATTCTGGCGGCGTGGACCAATGCGGTTGGGCCGTCAGGGCTGGAGTCAGACACGAGAAGAAGCGAGTTCAACATTTTGTCGGGCACATCGATGGCGTGTCCTCACGTGAGTGGGGCAGCGGCGTTGTTGAAATCCGCGCACCCTGATTGGAGCCCTGCAGCCATAAGGTCTGCAATGATGACAACCGCTACGGTTCTTGACAACACCAACCGTCAAATGGTTGATCAAGCCACTGGGAATGGCTCCACGCCCTACGATTTCGGCGCTGGACATCTCAACCTCGCTCACGCCATCGACCCTGGGTTGATTTTCGACATTACCAACGATGATTACGTCATGTTTTTGTGTGCCATTGGCTACAGGCCCAGGGTGATTCAGGTGATTACTCGATCGCCGCCTAAATGTCCACGGAGGAGGAGGCCGTCGCCGGAGAATCTGAACTATCCGTCCTTTGTGGCGGTCCTGCCAGCGTATTCATCCTCCAGAGGGTTATCGTTGCTGAGAAAGACGTTCTTCAGGACGGTGACGAACGTGGGTGAGCCAAATTCGGTGTATTGGGTGAGGGTAGAGATGCAGGCGGAGGGAGTGACGGTGACGGTGAGGCCGTCGAGGCTAGTGTTTTCGGAGGCGGTTAAGAAGCGGAGTTTCGTAGTGACGGTGACGGGAGATGCAGGGAATCTGGTGCTGGGCGAGGCCGGAGCGGTCTTCGGGTCGCTTTCGTGGACCGATGGGAAGCACGTTGTTCGGAGCCCCATGGTTGTCACCCAAGCTCAACCG 1746 0.543 SGTLFNDTVEFLSPRDADGHGTHTASTAAGRYVFEASMAGYASGVAKGVAPKARLAMYKVCWKNSGCFDSDILAAFDAAVNDGVDVISMSIGGGDGISSPYYLDPIAIGSYGAVSRGVFVSSSGGNDGPSGMSVTNLAPWLTTVAAGTIDRDFPAEVILGNGRRLFGVSLYSGVPLKGRMFPLIYPGKSGVLTDSLCMENSLDPDLVKGKIVVCDRGSNPRVAKGLEVKKAGGVGMILANGISNGEGLVGDAHLLPACALGADLGDEVKAYISSSENPRATIDFKGTVVGIKPAPVVASFSARGPNGLNLEILKPDLAAPGVNILAAWTNAVGPSGLESDTRRSEFNILSGTSMACPHVSGAAALLKSAHPDWSPAAIRSAMMTTATVLDNTNRQMVDQATGNGSTPYDFGAGHLNLAHAIDPGLIFDITNDDYVMFLCAIGYRPRVIQVITRSPPKCPRRRRPSPENLNYPSFVAVLPAYSSSRGLSLLRKTFFRTVTNVGEPNSVYWVRVEMQAEGVTVTVRPSRLVFSEAVKKRSFVVTVTGDAGNLVLGEAGAVFGSLSWTDGKHVVRSPMVVTQAQP 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4603g00001 582 Gene3D Peptidase S8/S53 domain 9 434 IPR036852 GO:0004252|GO:0006508
Vium4603g00001 582 Pfam Fibronectin type-III domain 468 577 IPR041469 -
Vium4603g00001 582 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 12 577 IPR045051 -
Vium4603g00001 582 Gene3D - 438 580 - -
Vium4603g00001 582 Gene3D - 150 289 - -
Vium4603g00001 582 Pfam PA domain 194 266 IPR003137 -
Vium4603g00001 582 FunFam subtilisin-like protease SBT1.5 150 289 - -
Vium4603g00001 582 SUPERFAMILY Subtilisin-like 6 425 IPR036852 GO:0004252|GO:0006508
Vium4603g00001 582 SUPERFAMILY PA domain 207 279 IPR046450 -
Vium4603g00001 582 CDD Peptidases_S8_3 5 387 IPR034197 -
Vium4603g00001 582 CDD PA_subtilisin_like 157 282 - -
Vium4603g00001 582 PRINTS Subtilisin serine protease family (S8) signature 350 366 IPR015500 -
Vium4603g00001 582 PRINTS Subtilisin serine protease family (S8) signature 16 29 IPR015500 -
Vium4603g00001 582 ProSiteProfiles Serine proteases, subtilase domain profile. 1 421 - -
Vium4603g00001 582 Pfam Subtilase family 13 404 IPR000209 GO:0006508|GO:0008236
Vium4603g00001 582 ProSitePatterns Serine proteases, subtilase family, serine active site. 351 361 IPR023828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4603g00001 Vium-Chr4603 7 1752 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4603g00001 5 579 Subtilisin-like Serine Gene Family AT4G34980 74.132 0.0 881
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4603g00001 - - vum:124838492 1139.02