Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4599g00029 ATGGTCAGCGAGATGGAGAATGATTGCATAGAGGACATGGACATTGAGGCCCTTCATTCAATGTGGCCTGAAGATATTGGAACTGATGTTGGAAAGCAGTTTAATATAGAAAAGCCTGGAAGGGACCAAGACATGTTAGAGGAGGTTACTATCATAGAGGAGCCAACTATAGTTGATTTCAAGCGACTCATGGAGCTTACAAATTTTACAGAAAAGGGGTCTTCTCAGTTGGCATACCTAATGAAACACTGGGAGTACAAACAGGCCAATGTTGTGCGTCTTCTCAGAGAAGAACTCGACAACCTTAGCAAGCAAAGGCAGGATGTTGAACTCAGGAAATTGGAGATATTGGAAGAACATCGATTTGTGGAAGAAAGATATGGGGGTGATAAACGCCCGGTTTCTATTTTGGATGACGTTTATGATGGTATATGGCATGATGTACCTTGCAGGAAAAGTGATGTTGTGCTTCAAAACAAGAAGAACGAGATTGATGCTGAGTATGACACTGTCATGTACTGGAAACAGCGAGCCTTGCAATTAGAGAAGCAGCTGGAAGCAAGTATCCAAAGGGAACAGATACTTGAAGAAAAGTTGCTAGAAAGTATAGCAAACATTGAAAGGCAGTCCTCACCGGTGGAAGAACTGTCCCAGATCCTGAAAAGGGCAGACAATTTCTTGCATTTTATACTCCAAAATGCACCTGTTGTTATTGGCCACCAGGACAAAGATTTGCGCTATTGCTTTATATACAACCATTTTCCAAGTTTACAAGAAGAGGACATCATAGGAAAAACGGATGTTGAAATATTCACGGGAGCTGGTGTTAAGGAATCTCAAGAGTTTAAGAGAGAAGTTTTGGAAAAAGGATTACCTGCAAAAAGGGAAATCACTTTTGAGACAGAACTGTTTGGGTCAAAGACATTTTTGATATATGTAGAACCCGTGTTTAGCAAAGCAGGGGAGACAATTGGAATAAATTACATGGGAATGGATATAACAGATCAGGTGAGAAAAAGGGAAAGGATGGCAAAGATTCGGGAAGAGACTGCTGTTCAGAAAGCCAAGGAAACAGAACTGAATAAAACTATTCACATTACAGAGGAAACAATGCGAGCAAAACAAATGCTGGCAACAATGTCTCACGAGATAAGATCTCCTTTGTCTGGGGTTGTTAGCATGGCTGAAGTTCTTTCTAACACAAAACTTGATTGGGAGCAAAGACAACTCTTGGATGTCATGCTATCGTCTGGAGATTTGGTTCTTCAACTTATAAATGACATCCTTGATCTTTCCAAGGTCGAGTCAGGAGTCATGAAATTGGAAGCTACTAAATTCCGGCCAAGAGAGGTAGTCAAACATGTACTCCAGACTGCTGCAGTTTCGTTGCAAAAAGTACTAACCTTGGAAGGACATGTAACTGATGATGTACCTATTGAGGTGGTTGGTGATGTTTTAAGGATGCGGCAAATTCTCACAAATTTAATTAGCAATGCCGTGAAGTTCACCCATGAAGGCAAAATTGGAATAAACCTTTACGTCGTGCCAGAACCTTCTTTTGCAAAGGCAGAATGTATACAAAAGATGACTTCAGAGCATTCAGCTATTTCAGTGCCTCAAAGTGGCAGCGACAGAAAACCTCTTGGTGATGATTGTCCCAGCCAAAACCATGCATTCAATGACGAATGTAGATCACCGGTTAAAAGTGAATGCTCAATGAATGGAGACACTGAGGAGCAACCTTTTTCAGCTGGAACAACAGTGTGGATACGTTGTGATGTATATGACACGGGCATTGGAATACCAGATGCTATACCAACCTTGTTTAAAAGGTACATGCAAGTCAGTGCAGACCATTCTCGAAAGTACGGTGGCACAGGGCTAGGACTAGCAATATGCAAACAGCTGGTTGAGTTGATGGGGGGTCGTCTAACCGTGTCTAGCAAAGAACATTATGGTTCTACCTTCACTTTCATACTCCCATACAAGGTTTCAATTGCTTGTGATAATTCTGATGACCAGGATGAGCTGTCTGATGTAGAGAATAATGATGCTGCATCTGATGATACAATAGAAAGTTTCTTCCAATTCCAGCCACGCACTTTGGGCTCTCTTTTCTCATCTAATGGATGTAGCAAGACACAGATGTTATTACCAAACAAAATTGGCTACAGAAGCTCCCATAAACTTGGTGGATTTTCTGAGAGTTTATATCCAATCCTCTCTAATGATATCATGTCAAAAGAGACATGCTCAGTTGATGATTCATCTTCAGTTGTTGATGGTCCAGAGATGTCTGAATCGGCCAGTTCATCTGATCACAGCTCAGAATCAAAGAACAGAAGTTTAGTTAGCAGAGATAAACTCCAGCAAGATAAGGCTCATACCTGGTCCTTGAATGGTTATGCAGATTCCTCTGAAGCAACTGTGGCAAGTGGAGAAATGGCTGCAGCAACAAAGTCATGTGAATCCCAACAAACATGTCAGGGTCAGGGGAAGACTAACACAACTATCCAATCAAGCAACGGTACACTAGGAGTAACCAAATCCTCATCATGGCCTAAGATCCTTCTTGTTGAAGATACCAAGATTAATATCGTGGTGACACAGACCATGATGAAGCAATTAGGCCATAGCATAGATGTTGTGAATAATGGAGTGGAAGCTGTACGTGCAGTTCAGCGCTGCACGTATAACCTGATTCTGATGGATGTCTGCATGCCAGTTATGAATGGTCTTGAAGCAACAAAACTGATTCGATCTTTTGAGGAAACAGGCAATTGGGATGCTGCAAGAAATGCAGGAATCGAGCAAAGTCTTCGAGACTCAGATTATGAATGTTCTGAACCTTGTAGAAAGCGGATTCCCATTGTTGCTATGACAGCAAATGCTTTGTCAGAGAGTGCCGAAGAGTGTTATGCAAATGGAATGGATTCGTTTGTGTCAAAACCTGTAACTCTCCAGAAACTGAAAGAGTGTATTGAACAGTACCTGAGGTGA 3000 0.4163 MVSEMENDCIEDMDIEALHSMWPEDIGTDVGKQFNIEKPGRDQDMLEEVTIIEEPTIVDFKRLMELTNFTEKGSSQLAYLMKHWEYKQANVVRLLREELDNLSKQRQDVELRKLEILEEHRFVEERYGGDKRPVSILDDVYDGIWHDVPCRKSDVVLQNKKNEIDAEYDTVMYWKQRALQLEKQLEASIQREQILEEKLLESIANIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKDLRYCFIYNHFPSLQEEDIIGKTDVEIFTGAGVKESQEFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKAGETIGINYMGMDITDQVRKRERMAKIREETAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEVLSNTKLDWEQRQLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAVSLQKVLTLEGHVTDDVPIEVVGDVLRMRQILTNLISNAVKFTHEGKIGINLYVVPEPSFAKAECIQKMTSEHSAISVPQSGSDRKPLGDDCPSQNHAFNDECRSPVKSECSMNGDTEEQPFSAGTTVWIRCDVYDTGIGIPDAIPTLFKRYMQVSADHSRKYGGTGLGLAICKQLVELMGGRLTVSSKEHYGSTFTFILPYKVSIACDNSDDQDELSDVENNDAASDDTIESFFQFQPRTLGSLFSSNGCSKTQMLLPNKIGYRSSHKLGGFSESLYPILSNDIMSKETCSVDDSSSVVDGPEMSESASSSDHSSESKNRSLVSRDKLQQDKAHTWSLNGYADSSEATVASGEMAAATKSCESQQTCQGQGKTNTTIQSSNGTLGVTKSSSWPKILLVEDTKINIVVTQTMMKQLGHSIDVVNNGVEAVRAVQRCTYNLILMDVCMPVMNGLEATKLIRSFEETGNWDAARNAGIEQSLRDSDYECSEPCRKRIPIVAMTANALSESAEECYANGMDSFVSKPVTLQKLKECIEQYLR 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4599g00029 999 Gene3D PAS domain 213 348 - -
Vium4599g00029 999 SMART HisKA_10 372 437 IPR003661 GO:0000155|GO:0007165
Vium4599g00029 999 Coils Coil 92 119 - -
Vium4599g00029 999 FunFam Putative histidine kinase 5 360 437 - -
Vium4599g00029 999 SMART REC_2 854 994 IPR001789 GO:0000160
Vium4599g00029 999 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 437 IPR036097 GO:0000155|GO:0007165
Vium4599g00029 999 CDD HATPase_EvgS-ArcB-TorS-like 488 661 - -
Vium4599g00029 999 Gene3D - 848 999 - -
Vium4599g00029 999 MobiDBLite consensus disorder prediction 826 845 - -
Vium4599g00029 999 Coils Coil 987 999 - -
Vium4599g00029 999 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 12 998 - -
Vium4599g00029 999 FunFam Histidine kinase 5 848 999 - -
Vium4599g00029 999 Coils Coil 178 209 - -
Vium4599g00029 999 CDD HisKA 371 433 IPR003661 GO:0000155|GO:0007165
Vium4599g00029 999 Pfam His Kinase A (phospho-acceptor) domain 374 437 IPR003661 GO:0000155|GO:0007165
Vium4599g00029 999 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 483 662 IPR003594 -
Vium4599g00029 999 MobiDBLite consensus disorder prediction 752 778 - -
Vium4599g00029 999 PRINTS Bacterial sensor protein C-terminal signature 648 661 IPR004358 GO:0016310|GO:0016772
Vium4599g00029 999 PRINTS Bacterial sensor protein C-terminal signature 590 604 IPR004358 GO:0016310|GO:0016772
Vium4599g00029 999 PRINTS Bacterial sensor protein C-terminal signature 624 642 IPR004358 GO:0016310|GO:0016772
Vium4599g00029 999 ProSiteProfiles Histidine kinase domain profile. 379 664 IPR005467 -
Vium4599g00029 999 SMART HKATPase_4 483 664 IPR003594 -
Vium4599g00029 999 CDD REC_hyHK_CKI1_RcsC-like 856 994 - -
Vium4599g00029 999 ProSiteProfiles Response regulatory domain profile. 855 998 IPR001789 GO:0000160
Vium4599g00029 999 Pfam Response regulator receiver domain 856 923 IPR001789 GO:0000160
Vium4599g00029 999 MobiDBLite consensus disorder prediction 752 787 - -
Vium4599g00029 999 SUPERFAMILY CheY-like 854 999 IPR011006 -
Vium4599g00029 999 SUPERFAMILY PYP-like sensor domain (PAS domain) 217 334 IPR035965 -
Vium4599g00029 999 FunFam Histidine kinase 5 214 349 - -
Vium4599g00029 999 Gene3D - 438 667 IPR036890 -
Vium4599g00029 999 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 426 662 IPR036890 -
Vium4599g00029 999 Gene3D - 358 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4599g00029 Vium-Chr4599 184154 189796 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4599g00029 1 998 Histidine Kinase Gene Family AT5G10720 57.921 0.0 1096
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium4599g00029 HATPase_c 1e-25 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4599g00029 - - gmx:100819520 1679.46