Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4599g00028 ATGGTCAGCGAGATGGAGAATGATTGCATAGAGGACATGGACATTGAGGCCCTTCATTCAATGTGGCCTGAAGATATTGGAACTGATGTTGGAAAGCAGTTTAATATAGAAAAGCCTGGAAGGGACCAAGACATGTTAGAGGAGGTTACTATCATAGAGGAGCCAACTATAGTTGATTTCAAGCGACTCATGGAGCTTACAAATTTTACAGAAAAGGGGTCTTCTCAGTTGGCATACCTAATGAAACACTGGGAGTACAAACAGGCCAATGTTGTGCGTCTTCTCAGAGAAGAACTCGACAACCTTAGCAAGCAAAGGCAGGATGTTGAACTCAGGAAATTGGAGATATTGGAAGAACATCGATTTGTGGAAGAAAGATATGGGGGTGATAAACGCCCGGTTTCTATTTTGGATGACGTTTATGATGGTATATGGCATGATGTACCTTGCAGGAAAAGTGATGTTGTGCTTCAAAACAAGAAGAACGAGATTGATGCTGAGTATGACACTGTCATGTACTGGAAACAGCGAGCCTTGCAATTAGAGAAGCAGCTGGAAGCAAGTATCCAAAGGGAACAGATACTTGAAGAAAAGTTGCTAGAAAGTATAGCAAACATTGAAAGGCAGTCCTCACCGGTGGAAGAACTGTCCCAGATCCTGAAAAGGGCAGACAATTTCTTGCATTTTATACTCCAAAATGCACCTGTTGTTATTGGCCACCAGGACAAAGATTTGCGCTATTGCTTTATATACAACCATTTTCCAAGTTTACAAGAAGAGGACATCATAGGAAAAACGGATGTTGAAATATTCACGGGAGCTGGTGTTAAGGAATCTCAAGAGTTTAAGAGAGAAGTTTTGGAAAAAGGATTACCTGCAAAAAGGGAAATCACTTTTGAGACAGAACTGTTTGGGTCAAAGACATTTTTGATATATGTAGAACCCGTGTTTAGCAAAGCAGGGGAGACAATTGGAATAAATTACATGGGAATGGATATAACAGATCAGGTGAGAAAAAGGGAAAGGATGGCAAAGATTCGGGAAGAGACTGCTGTTCAGAAAGCCAAGGAAACAGAACTGAATAAAACTATTCACATTACAGAGGAAACAATGCGAGCAAAACAAATGCTGGCAACAATGTCTCACGAGATAAGATCTCCTTTGTCTGGGGTTGTTAGCATGGCTGAAGTTCTTTCTAACACAAAACTTGATTGGGAGCAAAGACAACTCTTGGATGTCATGCTATCGTCTGGAGATTTGGTTCTTCAACTTATAAATGACATCCTTGATCTTTCCAAGGTCGAGTCAGGAGTCATGAAATTGGAAGCTACTAAATTCCGGCCAAGAGAGGTAGTCAAACATGTACTCCAGACTGCTGCAGTTTCGTTGCAAAAAGTACTAACCTTGGAAGGACATGTAACTGATGATGTACCTATTGAGGTGGTTGGTGATGTTTTAAGGATGCGGCAAATTCTCACAAATTTAATTAGCAATGCCGTGAAGTTCACCCATGAAGGCAAAATTGGAATAAACCTTTACGTCGTGCCAGAACCTTCTTTTGCAAAGGCAGAATGTATACAAAAGATGACTTCAGAGCATTCAGCTATTTCAGTGCCTCAAAGTGGCAGCGACAGAAAACCTCTTGGTGATGATTGTCCCAGCCAAAACCATGCATTCAATGACGAATGTAGATCACCGGTTAAAAGTGAATGCTCAATGAATGGAGACACTGAGGAGCAACCTTTTTCAGCTGGAACAACAGTGTGGATACGTTGTGATGTATATGACACGGGCATTGGAATACCAGAAGATGCTATACCAACCTTGTTTAAAAGGTACATGCAAGTCAGTGCAGACCATTCTCGAAAGTACGGTGGCACAGGGCTAGGACTAGCAATATGCAAACAGCTGGTTGAGTTGATGGGGGGTCGTCTAACCGTGTCTAGCAAAGAACATTATGGTTCTACCTTCACTTTCATACTCCCATACAAGGTTTCAATTGCTTGTGATAATTCTGATGACCAGGATGAGCTGTCTGATGTAGAGAATAATGATGCTGCATCTGATGATACAATAGAAAGTTTCTTCCAATTCCAGCCACGCACTTTGGGCTCTCTTTTCTCATCTAATGGATGTAGCAAGACACAGATGTTATTACCAAACAAAATTGGCTACAGAAGCTCCCATAAACTTGGTGGATTTTCTGAGAGTTTATATCCAATCCTCTCTAATGATATCATGTCAAAAGAGACATGCTCAGTTGATGATTCATCTTCAGTTGTTGATGGTCCAGAGATGTCTGAATCGGCCAGTTCATCTGATCACAGCTCAGAATCAAAGAACAGAAGTTTAGTTAGCAGAGATAAACTCCAGCAAGATAAGGCTCATACCTGGTCCTTGAATGGTTATGCAGATTCCTCTGAAGCAACTGTGGCAAGTGGAGAAATGGCTGCAGCAACAAAGTCATGTGAATCCCAACAAACATGTCAGGGTCAGGGGAAGACTAACACAACTATCCAATCAAGCAACGGTACACTAGGAGTAACCAAATCCTCATCATGGCCTAAGATCCTTCTTGTTGAAGATACCAAGATTAATATCGTGGTGACACAGACCATGATGAAGCAATTAGGCCATAGCATAGATGTTGTGAATAATGGAGTGGAAGCTGTACGTGCAGTTCAGCGCTGCACGTATAACCTGATTCTGATGGATGTCTGCATGCCAGTTATGAATGGTCTTGAAGCAACAAAACTGATTCGATCTTTTGAGGAAACAGGCAATTGGGATGCTGCAAGAAATGCAGGAATCGAGCAAAGTCTTCGAGACTCAGATTATGAATGTTCTGAACCTTGTAGAAAGCGGATTCCCATTGTTGCTATGACAGCAAATGCTTTGTCAGAGAGTGCCGAAGAGTGTTATGCAAATGGAATGGATTCGTTTGTGTCAAAACCTGTAACTCTCCAGAAACTGAAAGAGTGTATTGAACAGTACCTGAGGTGA 3003 0.4163 MVSEMENDCIEDMDIEALHSMWPEDIGTDVGKQFNIEKPGRDQDMLEEVTIIEEPTIVDFKRLMELTNFTEKGSSQLAYLMKHWEYKQANVVRLLREELDNLSKQRQDVELRKLEILEEHRFVEERYGGDKRPVSILDDVYDGIWHDVPCRKSDVVLQNKKNEIDAEYDTVMYWKQRALQLEKQLEASIQREQILEEKLLESIANIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKDLRYCFIYNHFPSLQEEDIIGKTDVEIFTGAGVKESQEFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKAGETIGINYMGMDITDQVRKRERMAKIREETAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEVLSNTKLDWEQRQLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAVSLQKVLTLEGHVTDDVPIEVVGDVLRMRQILTNLISNAVKFTHEGKIGINLYVVPEPSFAKAECIQKMTSEHSAISVPQSGSDRKPLGDDCPSQNHAFNDECRSPVKSECSMNGDTEEQPFSAGTTVWIRCDVYDTGIGIPEDAIPTLFKRYMQVSADHSRKYGGTGLGLAICKQLVELMGGRLTVSSKEHYGSTFTFILPYKVSIACDNSDDQDELSDVENNDAASDDTIESFFQFQPRTLGSLFSSNGCSKTQMLLPNKIGYRSSHKLGGFSESLYPILSNDIMSKETCSVDDSSSVVDGPEMSESASSSDHSSESKNRSLVSRDKLQQDKAHTWSLNGYADSSEATVASGEMAAATKSCESQQTCQGQGKTNTTIQSSNGTLGVTKSSSWPKILLVEDTKINIVVTQTMMKQLGHSIDVVNNGVEAVRAVQRCTYNLILMDVCMPVMNGLEATKLIRSFEETGNWDAARNAGIEQSLRDSDYECSEPCRKRIPIVAMTANALSESAEECYANGMDSFVSKPVTLQKLKECIEQYLR 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4599g00028 1000 Pfam Response regulator receiver domain 857 924 IPR001789 GO:0000160
Vium4599g00028 1000 SMART HisKA_10 372 437 IPR003661 GO:0000155|GO:0007165
Vium4599g00028 1000 Coils Coil 92 119 - -
Vium4599g00028 1000 FunFam Putative histidine kinase 5 360 437 - -
Vium4599g00028 1000 ProSiteProfiles Histidine kinase domain profile. 379 665 IPR005467 -
Vium4599g00028 1000 MobiDBLite consensus disorder prediction 753 779 - -
Vium4599g00028 1000 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 426 663 IPR036890 -
Vium4599g00028 1000 SMART HKATPase_4 483 665 IPR003594 -
Vium4599g00028 1000 SUPERFAMILY CheY-like 855 1000 IPR011006 -
Vium4599g00028 1000 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 437 IPR036097 GO:0000155|GO:0007165
Vium4599g00028 1000 CDD REC_hyHK_CKI1_RcsC-like 857 995 - -
Vium4599g00028 1000 MobiDBLite consensus disorder prediction 753 788 - -
Vium4599g00028 1000 Coils Coil 178 209 - -
Vium4599g00028 1000 Gene3D - 438 668 IPR036890 -
Vium4599g00028 1000 CDD HisKA 371 433 IPR003661 GO:0000155|GO:0007165
Vium4599g00028 1000 CDD HATPase_EvgS-ArcB-TorS-like 488 662 - -
Vium4599g00028 1000 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 12 999 - -
Vium4599g00028 1000 Pfam His Kinase A (phospho-acceptor) domain 374 437 IPR003661 GO:0000155|GO:0007165
Vium4599g00028 1000 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 483 663 IPR003594 -
Vium4599g00028 1000 Gene3D PAS domain 213 348 - -
Vium4599g00028 1000 ProSiteProfiles Response regulatory domain profile. 856 999 IPR001789 GO:0000160
Vium4599g00028 1000 SUPERFAMILY PYP-like sensor domain (PAS domain) 217 334 IPR035965 -
Vium4599g00028 1000 Gene3D - 849 1000 - -
Vium4599g00028 1000 FunFam Histidine kinase 5 214 349 - -
Vium4599g00028 1000 PRINTS Bacterial sensor protein C-terminal signature 649 662 IPR004358 GO:0016310|GO:0016772
Vium4599g00028 1000 PRINTS Bacterial sensor protein C-terminal signature 625 643 IPR004358 GO:0016310|GO:0016772
Vium4599g00028 1000 PRINTS Bacterial sensor protein C-terminal signature 590 604 IPR004358 GO:0016310|GO:0016772
Vium4599g00028 1000 MobiDBLite consensus disorder prediction 827 846 - -
Vium4599g00028 1000 SMART REC_2 855 995 IPR001789 GO:0000160
Vium4599g00028 1000 Gene3D - 358 437 - -
Vium4599g00028 1000 FunFam Histidine kinase 5 849 1000 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4599g00028 Vium-Chr4599 184154 189796 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4599g00028 1 999 Histidine Kinase Gene Family AT5G10720 58.020 0.0 1103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium4599g00028 HATPase_c 6.6e-28 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4599g00028 - - gmx:100819520 1686