Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4599g00019 ATGTCTGGTGGTGGAGATTGTAAGAGTGGCGAAAAGTTATACAAAGGGGTGAGGAAGAGAAAGTGGGGGAAATGGGTTTCTGAAATCAGACTCCCCAATAGCCGAGAACGCATATGGCTAGGGTCTTATGATTCTCCTGAAAAAGCAGCACGAGCCTTCGATGCTGCCCTTTTCTGTCTACGTGGTCGCCGTGCCAATTTCAACTTCCCCAACACTCCTTGCAACATGGACACCAATGTGCCTCTGCCTTTGCCTGCTCTCCAATCTCTTACCCCACACGAGATTCAAGAGGTTGCTGCTAAGTTTGCAAACGAGGACCCATTACTACTAAAACCTCTTGCACAAGAATCTCATGCTGATGCTCATGCTCATGCTGCTGCTGCTGCTGGGAATTCTTCGTCATTTAGGGGGAATTTGTGTAAATCTGACAGCACAGTAGAGAGTAGTTCTAGTACCCGCACGCCCACCGCCACTACCTCCTCATGTTCTACTACTATGCATGAATGTGATGGATTGGTGCAGGTGGACCATGGGGACATGGATTGGACATTCTTGAAAGAGTTTGATTACTCCAACGAAGTTTTCCCTGTTGGATCCGACTATGATCTCTACTTTGAGCTACACAAGATGCACTCAACTTCAGGTGAGTTATTGTATTCCACTCCACCCCCACCTCCTTTTGAGGGTTACCAAGAATTGACCGAAGCCGAAGAAGATCCTTTTTCTCACCAATCATTCCTTTGGAATTGGAACTTTTGA 759 0.469 MSGGGDCKSGEKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALFCLRGRRANFNFPNTPCNMDTNVPLPLPALQSLTPHEIQEVAAKFANEDPLLLKPLAQESHADAHAHAAAAAGNSSSFRGNLCKSDSTVESSSSTRTPTATTSSCSTTMHECDGLVQVDHGDMDWTFLKEFDYSNEVFPVGSDYDLYFELHKMHSTSGELLYSTPPPPPFEGYQELTEAEEDPFSHQSFLWNWNF 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4599g00019 252 MobiDBLite consensus disorder prediction 144 163 - -
Vium4599g00019 252 Gene3D AP2/ERF domain 13 71 IPR036955 GO:0003700|GO:0006355
Vium4599g00019 252 SUPERFAMILY DNA-binding domain 13 70 IPR016177 GO:0003677
Vium4599g00019 252 FunFam Ethylene-responsive transcription factor 2 12 71 - -
Vium4599g00019 252 Pfam AP2 domain 14 62 IPR001471 GO:0003700|GO:0006355
Vium4599g00019 252 CDD AP2 12 72 IPR001471 GO:0003700|GO:0006355
Vium4599g00019 252 SMART rav1_2 13 76 IPR001471 GO:0003700|GO:0006355
Vium4599g00019 252 PRINTS Ethylene responsive element binding protein signature 14 25 IPR001471 GO:0003700|GO:0006355
Vium4599g00019 252 PRINTS Ethylene responsive element binding protein signature 36 52 IPR001471 GO:0003700|GO:0006355
Vium4599g00019 252 ProSiteProfiles AP2/ERF domain profile. 13 70 IPR001471 GO:0003700|GO:0006355
Vium4599g00019 252 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 11 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4599g00019 Vium-Chr4599 109611 110400 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4599g00019 14 104 AP2-EREBP Transcription Factor Family AT1G74930 73.626 3.34e-41 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vium4599g00019 AP2 3.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4599g00019 - - vra:106760431 458.373