Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4599g00013 ATGGGTGGTGATGGTAGAGTTGAAGTTGTGAGTGGCAAGGGGTGTTCGAGGCTGTTTTCATCTTCACTTCCTTCGTTCAGAGGTTTGCAACCATTGGAGCCAATGTCTCCTGTTTCTTCCTCTGTGCAAGTGCCATCATCAACTGCTCCTTTTGCCGGTCTCGTCATATGCGTCACTGGTTTATCTAAAGAAGCAAGGAATCAGGTCATGGAGGCTACAGAGAGATTAGGTGGCCTGTATAGCCCTAATTTGCATCCTCAATGTACCCATTTGGTGGTTCAGAGTTTTGGTGGACGTAAGTTTGAGCATGCACTGAAGCATGGAACAAAAAATGGGCTTTTTATTGTCACACTGGGTTGGTTTGTGGATAGCGTCAGGAAAAATGTGAGGTTGAGCGAATCACATTATAGAGTGAAGAGTTATGGGGATAACAACGTGCTCATGGAAGATTTTAGGCCGCTTTCTGAGTATACAAATGCTGATAATCATTGTCTTCCGGCAAGAATCCACCAAGTGAAGAAAGCTAATAACGTTGAGGAACTTCAAAGATTCTCTGTGAGAGAGTCTATCAGAAATTCGGACTCAACTTTGTCTGGTTGCTCCATCTATGTTGATCCAGGAATTTCATCCGAGTTGAGGAACAAGGTTATTGAGTCTGCTTCAAGGGAAGGTGCTAATTTGGTGGAACAATGGTTTGTTGGCTGCAATGTTAGTCATGTAGTAACTGAAGGGACATCAATCCAAAGATACCTTGGATATTGTAATAACCTCATTACACCTCTGTGGATAATCAAAACAGCTAAGGAGAAATATGTGCGAAGGCTTGTTCACATGTCTGTTGATTTGGCAAAGCAAGTTGGCCTGATACTTGAAGACGTTAATAGTGGCATTTCAGGAAAGGAAGTAATAAAGCAAAAAGCCACTGACTATCCTCTGGATAGTGAAAGTGAAGTCAGCTATGAAGAAAGACAACAAATTGTGAACTCTGCAAAAATTGGAGTCAGAAACCGCCGTGGCCGTCGAATGCAGACTTGTCAAACTCCAATACGTCCTATAACACCCAACAACCTTCTCGACTCTATCTGCTGGTCTATATCTGACTCAACTTCAACTGCTTCCATCTACACAGACTCTTTTAGTGTTGAAGATCCTAGTGAAAATCACGCTTCAATATTTTTCGACGCAAAAGGGGATGGCAAGGATTCAGAAGCTTCATTTTCGAACTCCACTCGTCCTCTGACAGAAAGTGAGAAATCCGAGTTGATATTCAAAAACCATTTCCTTACCATACTCTTCCCAATTGACCGTTTTTCCGAGATGGGTCCTTCATCGAGAACGTTTTTCAGCCATAATGGCTTTACGTGTCTTCAGGAGAACATGTCAAGGCAGGAAATTGAAGTTGCAATTCATAGTGATTCAAGACATGCTGATAGGCTACGATCAGTGTACTCAAGTAAGGAAACAATAGCACGTGGCCACGTAACGTTCAAAAGGGTTGAATTCTTGGGTAGTCGAACAAGTTTTGAAATGTTGAAGCGTGTAAGTGGGGAAAACAACTCCAACGTTTATGAGCTATTACTTAGGGCCTAA 1590 0.4239 MGGDGRVEVVSGKGCSRLFSSSLPSFRGLQPLEPMSPVSSSVQVPSSTAPFAGLVICVTGLSKEARNQVMEATERLGGLYSPNLHPQCTHLVVQSFGGRKFEHALKHGTKNGLFIVTLGWFVDSVRKNVRLSESHYRVKSYGDNNVLMEDFRPLSEYTNADNHCLPARIHQVKKANNVEELQRFSVRESIRNSDSTLSGCSIYVDPGISSELRNKVIESASREGANLVEQWFVGCNVSHVVTEGTSIQRYLGYCNNLITPLWIIKTAKEKYVRRLVHMSVDLAKQVGLILEDVNSGISGKEVIKQKATDYPLDSESEVSYEERQQIVNSAKIGVRNRRGRRMQTCQTPIRPITPNNLLDSICWSISDSTSTASIYTDSFSVEDPSENHASIFFDAKGDGKDSEASFSNSTRPLTESEKSELIFKNHFLTILFPIDRFSEMGPSSRTFFSHNGFTCLQENMSRQEIEVAIHSDSRHADRLRSVYSSKETIARGHVTFKRVEFLGSRTSFEMLKRVSGENNSNVYELLLRA 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4599g00013 529 Pfam twin BRCT domain 54 110 IPR001357 -
Vium4599g00013 529 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 3 529 - -
Vium4599g00013 529 ProSiteProfiles BRCT domain profile. 46 138 IPR001357 -
Vium4599g00013 529 ProSiteProfiles BRCT domain profile. 192 270 IPR001357 -
Vium4599g00013 529 SUPERFAMILY BRCT domain 48 139 IPR036420 -
Vium4599g00013 529 CDD BRCT_TopBP1_rpt2_like 50 128 - -
Vium4599g00013 529 Gene3D BRCT domain 49 140 IPR036420 -
Vium4599g00013 529 SMART BRCT_7 48 128 IPR001357 -
Vium4599g00013 529 SMART BRCT_7 194 270 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4599g00013 Vium-Chr4599 70533 76923 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4599g00013 43 138 Core DNA Replication Machinery Family AT1G77320 38.542 1.40e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4599g00013 - - gmx:100815253 911.753