Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4599g00012 ATGTCTCCTGTTTCTTCCTCTGTGCAAGTGCCATCATCAACTGCTCCTTTTGCCGGTCTCGTCATATGCGTCACTGGTTTATCTAAAGAAGCAAGGAATCAGGTCATGGAGGCTACAGAGAGATTAGGTGGCCTGTATAGCCCTAATTTGCATCCTCAATGTACCCATTTGGTGGTTCAGAGTTTTGGTGGACGTAAGTTTGAGCATGCACTGAAGCATGGAACAAAAAATGGGCTTTTTATTGTCACACTGGGTTGGTTTGTGGATAGCGTCAGGAAAAATGTGAGGTTGAGCGAATCACATTATAGAGTGAAGAGTTATGGGGATAACAACGTGCTCATGGAAGATTTTAGGCCGCTTTCTGAGTATACAAATGCTGATAATCATTGTCTTCCGGCAAGAATCCACCAAGTGAAGAAAGCTAATAACGTTGAGGAACTTCAAAGATTCTCTGTGAGAGAGTCTATCAGAAATTCGGACTCAACTTTGTCTGGTTGCTCCATCTATGTTGATCCAGGAATTTCATCCGAGTTGAGGAACAAGGTTATTGAGTCTGCTTCAAGGGAAGGTGCTAATTTGGTGGAACAATGGTTTGTTGGCTGCAATGTTAGTCATGTAGTAACTGAAGGGACATCAATCCAAAGATACCTTGGATATTGTAATAACCTCATTACACCTCTGTGGATAATCAAAACAGCTAAGGAGAAATATGTGCGAAGGCTTGTTCACATGTCTGTTGATTTGGCAAAGCAAGTTGGCCTGATACTTGAAGACGTTAATAGTGGCATTTCAGGAAAGGAAGTAATAAAGCAAAAAGCCACTGACTATCCTCTGGATAGTGAAAGTGAAGTCAGCTATGAAGAAAGACAACAAATTGTGAACTCTGCAAAAATTGGAGTCAGAAACCGCCGTGGCCGTCGAATGCAGACTTGTCAAACTCCAATACGTCCTATAACACCCAACAACCTTCTCGACTCTATCTGCTGGTCTATATCTGACTCAACTTCAACTGCTTCCATCTACACAGACTCTTTTAGTGTTGAAGATCCTAGTGAAAATCACGCTTCAATATTTTTCGACGCAAAAGGGGATGGCAAGGATTCAGAAGCTTCATTTTCGAACTCCACTCGTCCTCTGACAGAAAGTGAGAAATCCGAGTTGATATTCAAAAACCATTTCCTTACCATACTCTTCCCAATTGACCGTTTTTCCGAGATGGGTCCTTCATCGAGAACGTTTTTCAGCCATAATGGCTTTACGTGTCTTCAGGTGTTGGATCATATACATGCATTTTATCAGGAGAACATGTCAAGGCAGGAAATTGAAGTTGCAATTCATAGTGATTCAAGACATGCTGATAGGCTACGATCAGTGTACTCAAGTAAGGAAACAATAGCACGTGGCCACGTAACGTTCAAAAGGGTTGAATTCTTGGGTAGTCGAACAAGTTTTGAAATGTTGAAGCGTGTAAGTGGGGAAAACAACTCCAACGTTTATGAGCTATTACTTAGGGCCTAA 1518 0.4177 MSPVSSSVQVPSSTAPFAGLVICVTGLSKEARNQVMEATERLGGLYSPNLHPQCTHLVVQSFGGRKFEHALKHGTKNGLFIVTLGWFVDSVRKNVRLSESHYRVKSYGDNNVLMEDFRPLSEYTNADNHCLPARIHQVKKANNVEELQRFSVRESIRNSDSTLSGCSIYVDPGISSELRNKVIESASREGANLVEQWFVGCNVSHVVTEGTSIQRYLGYCNNLITPLWIIKTAKEKYVRRLVHMSVDLAKQVGLILEDVNSGISGKEVIKQKATDYPLDSESEVSYEERQQIVNSAKIGVRNRRGRRMQTCQTPIRPITPNNLLDSICWSISDSTSTASIYTDSFSVEDPSENHASIFFDAKGDGKDSEASFSNSTRPLTESEKSELIFKNHFLTILFPIDRFSEMGPSSRTFFSHNGFTCLQVLDHIHAFYQENMSRQEIEVAIHSDSRHADRLRSVYSSKETIARGHVTFKRVEFLGSRTSFEMLKRVSGENNSNVYELLLRA 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4599g00012 505 SMART BRCT_7 14 94 IPR001357 -
Vium4599g00012 505 SMART BRCT_7 160 236 IPR001357 -
Vium4599g00012 505 Pfam twin BRCT domain 20 76 IPR001357 -
Vium4599g00012 505 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 8 505 - -
Vium4599g00012 505 ProSiteProfiles BRCT domain profile. 12 104 IPR001357 -
Vium4599g00012 505 Pfam Family of unknown function (DUF6699) 412 489 IPR046522 -
Vium4599g00012 505 CDD BRCT_TopBP1_rpt2_like 16 94 - -
Vium4599g00012 505 Gene3D BRCT domain 15 106 IPR036420 -
Vium4599g00012 505 SUPERFAMILY BRCT domain 14 105 IPR036420 -
Vium4599g00012 505 ProSiteProfiles BRCT domain profile. 158 236 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4599g00012 Vium-Chr4599 70533 77112 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4599g00012 9 104 Core DNA Replication Machinery Family AT1G77320 38.542 1.34e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4599g00012 - - gmx:100815253 889.797