Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4599g00011 ATGAATTTCAACCATGATTCATTACACCATAACCAAAATCAAAGTAAAAAACGAAAGCAACCCGATGTTGATAATTATACATCCCTGGAATTGTCTGCTTCCAACATGAACCCCAGAAGTTATCAGACAGAAGTGTTTGAAGTTGCACGGAGAAGGAACACAATAGCCGTGTTGGATACAGGCTCCGGTAAGACCTTGATTGCGGTGATGATTATGAAAGAGGTTGGTCAAACCATCAAGTCTTTGGGAATGAAGAAGCTGATTGTTTTCTTGGCTCCCACAGTTCATCTAGTCAATCAGCAATTCAATAATATAAGATATCTGACAGATTTTCAAGTTGAGGAATACTATGGGGCTAAAGGAGTTGATACATGGACTTTGAAGACATGGGAGCAGAAGATTAGTAACAATGATGTATTGGTTATGACACCTCAGATTCTTTTGGATGCCTTAAGAAAAGCATTCGTGCGTATGGAAATGATATGCTTGATTGTTATTGATGAATGTCATAGAGCAACTGGCAATCATCCCTATACAAAAATAATGAAGGAATTTTATCACCAAGTAAAGGAAAAGCCAAAGATTTTTGGGATGACAGCATCACCGGTTGGTAAAAGAGGTGTTTCCTCCACTGCGGATTGTGAGGATCAAATATCAGAACTTGAAAGTATCTTGGATTCTCAGAGATATACTGTTGAAGATCGAACAGAGATGAGTAGATATATATTGTCTGCTAAAGAGAGTTGTAGATTTCATGACCAAGCACGATTTTCTGCCTTGAGTTTGAAACCAAAGATTGAAGCCTTGTGGTCCAAGTTTGATGCATTGTTATCAGAAAATAAAAGCAACTATATGGATGTGGAGAATAAATTTAAGACACTGTCTCAGCGAATGTCCAATGAACTTGGAAAAATTTTACATTGCCTTGAAGATCTTGGAATCCTATGTGCTTATGAGGCAGTTAAAATCTGTCACGAGAATTTCTCCAAAACTGAAGGAACGTGTGAAATTTACAGAACAGATGATAAAAACATTTTGGGGGTTGATTTTGATTATTCAAAGGCAGAAGATATGGGATACTTATCTCCAAAGTTACTTGAACTTATTAAAATCTTCCAATCACTTGGCGAATCTAGTCAGGTGTTGTGCCTTATTTTTGTTGATAGAATCATTACAGCTAAGGTGATTGAAAGATTTGCAAAGAAAGTTCCCCAAATTTCTCATTTCTCAGTTTCCTATTTAACTGGAAACAGTACATCGGTTGATGCTGTGGCTCCTAAAAGGCAGAAGGAAATATTGGAATCTTTTCGCTCTGGAAAGGTCAATCTATTATTTACTACTGATGTACTTGAGGAAGGAATTCATGTGCCAAACTGCTCATGTGTGATAAGATTTGACCTCCCAAAGACAGTTCGTAGTTATGTCCAATCTCGCGGAAGATCTAGGCAGGCTAACTCCCAATTTGTTGTGATGTTGGAGAGGGGAAACCTGAAGCAAAGAGATCAACTCTTTGACATCATTAGGAGTGAGCGCTCCATGACTGATGCATCTATACATAAGGACCATGAATCTAATTTAAGGGTATTTACTGTGGGGAAAACAGATACATACTATGTGGATTCTACTGGAGCTTCTGTGACTTTAGATTCTAGTGTAAATCTTATCCACCGATACTGTGGAACACTTCCCCGAGATCAGTACTCCTCTGCAAAGCCCACTTATGATTTTCTGCCAGTGGAAGGGGGTTACCAATGTAAATTAACATTGCCATCTAATTCAGTCCTCCAGACAATAATTGGTCCATTAGGAAAACATATTCGTTTGGCAAGGCATCTTGCTTGTTTCGAAGCTTGTAAGAAGTTGCATCAAATGGGTGCTTTAAATGAACATTTGGTTCCATTCATCGAAGATGTTTCAGAAGATGACCATATCGTGAAAAATAAAGAATCTAGTTCAGGGGCAGGAACCACAAAGAGAAAGGAGTTACATGGAACAGCCAACATTTGTGCACTAAGTGGTGCATGGGGAGACAAACTTGATGTTGAAGCCAGATTTTTTGCCTACAAACTAGAATTCACATGTAGTATTGTTAACGAAATATACTCTGGGTTTGTTCTTTTGATTGAGTCAAAGCTTGATGATGATGTGGGAAATATTGAATCAGATCTTTATTTAGTCTCAAAGGTCGTGAAAGCTTCTGTCTCTTCATGTGGGCAAGTTGATTTGGATGCTAAACAGATGATGAAAGCAAAATGCTTCCATGAGCTTTTTTTCAATGGTTTGTTTGGTAGATTGGTGTTTAGGTCAAAATCAGCAGGAGGAGAAACAGAATTTTTACTACAAAAAGACACAAAATCATTATGGACAGCAAAACACTTATATTTGCTTCTACCACTTGAGAATTTGAATGGTATTTGTGAGGGAACCTTGCAAATTAATTGGCATGGAATTGATTCCTGTGCATCTGCTATTGAATTCTTAAGGAGAAGATATTCTTTGGTCACTGGAGATTGTGATGATAACGGAATAATCACATCACCTCAGGATACCAGTTCAATGGAGATGGAATATGTTGGAACAAACAAGATTCACTTTGCTAATTGTGTGCTTGATGCTGACAATATAAAAAACACGTTGGTTTTGGCGATTCATACTGGAAAAATATATTGTATTGTTGACATCGACAGTAACCTGTCTGCTGAAAGTCCTTTCTGTGGAAATAATGAAAAATCCAAGGAACGCTTTACCTACTCAGATTATTTCAGTAAAAGGTATGGGATTACCCTGAGACATCCAAGACATGCTCTATTACTATTAAAGCAAAGTCATAATCCACACAATCTTTTATTTAACTTTCATGAGGAAGATGCACGAGACAAATCATCACAAATTGGCTCTACAACCTCCAAAGTGCCTGCACATGTTCACGTCCCACCAGAGCTTTTATATGTTCTTGAATTTAAAAGAAACGTGTTGAGGTCATTGTACTTGTTGCCATCTCTAATGTACCGCATTGAATCATTAATGTTATCTAGTCAGCTTAGAGAAGAGATAGATGGTCAAACTAGCAAGTCCAACATAAATAGCTCACTGATTCTAGAGGCGCTTACAACTTTGAGATGCAGTGAAAATTTTTCAATGGAACGTCTTGAGTTGCTAGGAGATTCTGTTTTAAAGTATGTGGTGAGCTGTCACCTCTTTCTTAAATATCCCAAGAATCATGAAGGACATTTATCTGCCAAACGATCTCTAGCAGTTTGTAATTCAACCCTTCATAAATTGGCAATTGAACGTAAATTACAGGGTTATATTCGAGACTCTGCATTTGAACCACGACGTTGGGTTGCTCCAGGACAGCGTTCTATACACCCTGTTTCTTGTGATTGTGGATTGGAAACCCTTGAAGTGCCTTTAGATGTTAAATTCCACACTGAGGATCCCAAAGTTGTGGTTGGGAAGTTTTGTGACAGGGGTCACCGCTGGATGTGTTCTAAGACTATTTCTGACTGTGTTGAAGCTCTGATAGGAGCATACTATGTGGGGGGTGGACTATTTGCATCACTTAATGTGATGAAATGGCTTGGAATTGGAGCAGAACTTGAACTATCCTTGGTTGACGAAGCAATCACTGCTGCCTCTCTGCGTACTTGCATGCCAAAAGAAAGTGAGATTGCAAGCCTTGAAAAGAAAATTGGGTATGAATTTTCTGTCAAGGGACTCTTACTGGAGGCTATCACACATTTGTCTGAGAAAGAACTTGGGATTGGCTGCTGTTACGAGAGGCTTGAATTTCTTGGTGACTCAGTGTTGGACGTGCTTATCACATGGCATTTATATAAGAGTCACACAGATATTGATCCAGGGGTGTTGACTGACTTGCGATCTGCCTCTGTCAATAATGACAACTTTGCTCAAGTTGCTGTTAGACATAACCTTCACCAGCATCTCCTACATGGCTCAGGATTATTACTGAGCCAGATATCAGAATATGTGAAGGCCATTTCTGAATCGGATCCTAGATCACTTCCTAACATTAGAGCTCCGAAGGCACTTGGAGATCTAGTGGAAAGTATTGTTGGCGCAATGCTAATTGATTCCAAGCTCAGTCTAGACCGAGTGTGGGAGGTTTTCTGTCCTCTCTTATCCCCCATAGTTACACCTGAAAAACTTGAATTGCCCCCGTTTCGTGAATTAAATGAATTGTGCGATTCTCTTGGGTACTGTGTAAAAGTAAATGAAAACTGTGAAAAAAAGGGATCCATGATGCATGTTGAGGTTAGTGTACAGTTGCCAAATGATTTGTTGGTTCGTGAAGGAAAGGGGACAAATAAGAAAACTGCAAAAGGAGAAGCTTCTTTTCATTTGTTGAAGGACCTTGAGAAGCGGGGAATTTCATATTGTAATATCATGTCCAAGGGAAAAAGAGATAATTCTGTCCATATCAATGATTCACCTCATCTCAAAATGGATTCTAGTACTTGTTTTACTCTTAACGAAGAACATTCCTCAGAGTCGGTACATAAAAGGAACAGATTTGATGGAACTAACCCAACTGAAAGTATTTTGCCTCTCAAATACTCTTCTGGTGACGACTCTGGTTTTGGTGCTTCAATTCCAGTTAAGTTATCAATTAAAACGAAAAAGGGAGGACCACGGACCACACTATTTGAGGTGTGTAAGAAACTACAGTGGCCAGTGCCTGCATTTGCTTCAACAGAATATAAAGATAGATCTCTATTTGAATCCTGTGAAGGTCTGCAAGGAAGCAAGGGACTGAACTGTTTTGTTTCGAAAGTTACCTTGTGCATACCCAAGTATGGAAATATAGAGTGCCAAGGAGAAGCTAGAAGTGATAAGAAAAGCTCCTTTGACTCTGCTGCAGTTAAAATGCTTCTTGAGCTGCAAAAATTGGGAAAAGTTGAAATTGATCCTCCCCTTTCTAGTTAA 4947 0.3887 MNFNHDSLHHNQNQSKKRKQPDVDNYTSLELSASNMNPRSYQTEVFEVARRRNTIAVLDTGSGKTLIAVMIMKEVGQTIKSLGMKKLIVFLAPTVHLVNQQFNNIRYLTDFQVEEYYGAKGVDTWTLKTWEQKISNNDVLVMTPQILLDALRKAFVRMEMICLIVIDECHRATGNHPYTKIMKEFYHQVKEKPKIFGMTASPVGKRGVSSTADCEDQISELESILDSQRYTVEDRTEMSRYILSAKESCRFHDQARFSALSLKPKIEALWSKFDALLSENKSNYMDVENKFKTLSQRMSNELGKILHCLEDLGILCAYEAVKICHENFSKTEGTCEIYRTDDKNILGVDFDYSKAEDMGYLSPKLLELIKIFQSLGESSQVLCLIFVDRIITAKVIERFAKKVPQISHFSVSYLTGNSTSVDAVAPKRQKEILESFRSGKVNLLFTTDVLEEGIHVPNCSCVIRFDLPKTVRSYVQSRGRSRQANSQFVVMLERGNLKQRDQLFDIIRSERSMTDASIHKDHESNLRVFTVGKTDTYYVDSTGASVTLDSSVNLIHRYCGTLPRDQYSSAKPTYDFLPVEGGYQCKLTLPSNSVLQTIIGPLGKHIRLARHLACFEACKKLHQMGALNEHLVPFIEDVSEDDHIVKNKESSSGAGTTKRKELHGTANICALSGAWGDKLDVEARFFAYKLEFTCSIVNEIYSGFVLLIESKLDDDVGNIESDLYLVSKVVKASVSSCGQVDLDAKQMMKAKCFHELFFNGLFGRLVFRSKSAGGETEFLLQKDTKSLWTAKHLYLLLPLENLNGICEGTLQINWHGIDSCASAIEFLRRRYSLVTGDCDDNGIITSPQDTSSMEMEYVGTNKIHFANCVLDADNIKNTLVLAIHTGKIYCIVDIDSNLSAESPFCGNNEKSKERFTYSDYFSKRYGITLRHPRHALLLLKQSHNPHNLLFNFHEEDARDKSSQIGSTTSKVPAHVHVPPELLYVLEFKRNVLRSLYLLPSLMYRIESLMLSSQLREEIDGQTSKSNINSSLILEALTTLRCSENFSMERLELLGDSVLKYVVSCHLFLKYPKNHEGHLSAKRSLAVCNSTLHKLAIERKLQGYIRDSAFEPRRWVAPGQRSIHPVSCDCGLETLEVPLDVKFHTEDPKVVVGKFCDRGHRWMCSKTISDCVEALIGAYYVGGGLFASLNVMKWLGIGAELELSLVDEAITAASLRTCMPKESEIASLEKKIGYEFSVKGLLLEAITHLSEKELGIGCCYERLEFLGDSVLDVLITWHLYKSHTDIDPGVLTDLRSASVNNDNFAQVAVRHNLHQHLLHGSGLLLSQISEYVKAISESDPRSLPNIRAPKALGDLVESIVGAMLIDSKLSLDRVWEVFCPLLSPIVTPEKLELPPFRELNELCDSLGYCVKVNENCEKKGSMMHVEVSVQLPNDLLVREGKGTNKKTAKGEASFHLLKDLEKRGISYCNIMSKGKRDNSVHINDSPHLKMDSSTCFTLNEEHSSESVHKRNRFDGTNPTESILPLKYSSGDDSGFGASIPVKLSIKTKKGGPRTTLFEVCKKLQWPVPAFASTEYKDRSLFESCEGLQGSKGLNCFVSKVTLCIPKYGNIECQGEARSDKKSSFDSAAVKMLLELQKLGKVEIDPPLSS 1648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4599g00011 1648 Pfam Type III restriction enzyme, res subunit 36 202 IPR006935 GO:0003677|GO:0005524|GO:0016787
Vium4599g00011 1648 Gene3D - 32 268 IPR027417 -
Vium4599g00011 1648 SMART ultradead3 34 233 IPR014001 -
Vium4599g00011 1648 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 367 522 IPR001650 -
Vium4599g00011 1648 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1438 1461 IPR014720 -
Vium4599g00011 1648 SMART PAZ_2_a_3 847 1010 IPR003100 GO:0005515
Vium4599g00011 1648 Pfam PAZ domain 871 1007 IPR003100 GO:0005515
Vium4599g00011 1648 ProSiteProfiles PAZ domain profile. 872 986 IPR003100 GO:0005515
Vium4599g00011 1648 ProSiteProfiles Ribonuclease III family domain profile. 1011 1183 IPR000999 GO:0004525|GO:0006396
Vium4599g00011 1648 FunFam Endoribonuclease dicer-like 1 355 518 - -
Vium4599g00011 1648 FunFam Endoribonuclease dicer-like 1 546 642 - -
Vium4599g00011 1648 Gene3D - 354 519 IPR027417 -
Vium4599g00011 1648 Gene3D paz domain 859 984 - -
Vium4599g00011 1648 SUPERFAMILY RNase III domain-like 1022 1201 IPR036389 GO:0004525|GO:0006396
Vium4599g00011 1648 ProSitePatterns Ribonuclease III family signature. 1260 1268 IPR000999 GO:0004525|GO:0006396
Vium4599g00011 1648 PANTHER DICER-RELATED 52 1468 - -
Vium4599g00011 1648 CDD SF2_C_dicer 360 492 - -
Vium4599g00011 1648 MobiDBLite consensus disorder prediction 1 23 - -
Vium4599g00011 1648 FunFam Dicer-like 104 1006 1195 - -
Vium4599g00011 1648 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 551 641 IPR005034 GO:0016891
Vium4599g00011 1648 Gene3D Ribonuclease III domain 1220 1390 IPR036389 GO:0004525|GO:0006396
Vium4599g00011 1648 FunFam Endoribonuclease dicer-like 1 1218 1388 - -
Vium4599g00011 1648 SMART riboneu5 1030 1203 IPR000999 GO:0004525|GO:0006396
Vium4599g00011 1648 SMART riboneu5 1239 1390 IPR000999 GO:0004525|GO:0006396
Vium4599g00011 1648 Pfam Ribonuclease III domain 1260 1366 IPR000999 GO:0004525|GO:0006396
Vium4599g00011 1648 Pfam Ribonuclease III domain 1048 1182 IPR000999 GO:0004525|GO:0006396
Vium4599g00011 1648 Pfam Dicer dimerisation domain 551 636 - -
Vium4599g00011 1648 SMART helicmild6 397 484 IPR001650 -
Vium4599g00011 1648 ProSiteProfiles Ribonuclease III family domain profile. 1224 1367 IPR000999 GO:0004525|GO:0006396
Vium4599g00011 1648 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 492 IPR027417 -
Vium4599g00011 1648 CDD DEXHc_dicer 36 234 - -
Vium4599g00011 1648 FunFam Endoribonuclease dicer-like protein 33 272 - -
Vium4599g00011 1648 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 45 220 IPR014001 -
Vium4599g00011 1648 CDD RIBOc 1240 1388 IPR000999 GO:0004525|GO:0006396
Vium4599g00011 1648 SUPERFAMILY PAZ domain 872 986 IPR036085 GO:0005515
Vium4599g00011 1648 Gene3D Ribonuclease III domain 1012 1194 IPR036389 GO:0004525|GO:0006396
Vium4599g00011 1648 FunFam Dicer-like 104 863 983 - -
Vium4599g00011 1648 SUPERFAMILY RNase III domain-like 1223 1387 IPR036389 GO:0004525|GO:0006396
Vium4599g00011 1648 Pfam Helicase conserved C-terminal domain 370 481 IPR001650 -
Vium4599g00011 1648 CDD RIBOc 1030 1194 IPR000999 GO:0004525|GO:0006396
Vium4599g00011 1648 Gene3D - 1557 1637 - -
Vium4599g00011 1648 Gene3D Dicer dimerisation domain 546 643 IPR038248 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4599g00011 Vium-Chr4599 48874 69389 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4599g00011 382 481 Eukaryotic Initiation Factors Gene Family AT3G19760 33.981 1.62e-06 50.4