Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4599g00010 ATGAATTTCAACCATGATTCATTACACCATAACCAAAATCAAAGTAAAAAACGAAAGCAACCCGATGTTGATAATTATACATCCCTGGAATTGTCTGCTTCCAACATGAACCCCAGAAGTTATCAGACAGAAGTGTTTGAAGTTGCACGGAGAAGGAACACAATAGCCGTGTTGGATACAGGCTCCGGTAAGACCTTGATTGCGGTGATGATTATGAAAGAGGTTGGTCAAACCATCAAGTCTTTGGGAATGAAGAAGCTGATTGTTTTCTTGGCTCCCACAGTTCATCTAGTCAATCAGCAATTCAATAATATAAGATATCTGACAGATTTTCAAGTTGAGGAATACTATGGGGCTAAAGGAGTTGATACATGGACTTTGAAGACATGGGAGCAGAAGATTAGTAACAATGATGTATTGGTTATGACACCTCAGATTCTTTTGGATGCCTTAAGAAAAGCATTCGTGCGTATGGAAATGATATGCTTGATTGTTATTGATGAATGTCATAGAGCAACTGGCAATCATCCCTATACAAAAATAATGAAGGAATTTTATCACCAAGTAAAGGAAAAGCCAAAGATTTTTGGGATGACAGCATCACCGGTTGGTAAAAGAGGTGTTTCCTCCACTGCGGATTGTGAGGATCAAATATCAGAACTTGAAAGTATCTTGGATTCTCAGAGATATACTGTTGAAGATCGAACAGAGATGAGTAGATATATATTGTCTGCTAAAGAGAGTTGTAGATTTCATGACCAAGCACGATTTTCTGCCTTGAGTTTGAAACCAAAGATTGAAGCCTTGTGGTCCAAGTTTGATGCATTGTTATCAGAAAATAAAAGCAACTATATGGATGTGGAGAATAAATTTAAGACACTGTCTCAGCGAATGTCCAATGAACTTGGAAAAATTTTACATTGCCTTGAAGATCTTGGAATCCTATGTGCTTATGAGGCAGTTAAAATCTGTCACGAGAATTTCTCCAAAACTGAAGGAACGTGTGAAATTTACAGAACAGGTTATCTTCAGTGTATAAATTTTGTTGAAGACGTCATAAAATTAATTGAAGAATCCCTCCATTGTGATGATAAAAACATTTTGGGGGTTGATTTTGATTATTCAAAGGCAGAAGATATGGGATACTTATCTCCAAAGTTACTTGAACTTATTAAAATCTTCCAATCACTTGGCGAATCTAGTCAGGTGTTGTGCCTTATTTTTGTTGATAGAATCATTACAGCTAAGGTGATTGAAAGATTTGCAAAGAAAGTTCCCCAAATTTCTCATTTCTCAGTTTCCTATTTAACTGGAAACAGTACATCGGTTGATGCTGTGGCTCCTAAAAGGCAGAAGGAAATATTGGAATCTTTTCGCTCTGGAAAGGTCAATCTATTATTTACTACTGATGTACTTGAGGAAGGAATTCATGTGCCAAACTGCTCATGTGTGATAAGATTTGACCTCCCAAAGACAGTTCGTAGTTATGTCCAATCTCGCGGAAGATCTAGGCAGGCTAACTCCCAATTTGTTGTGATGTTGGAGAGGGGAAACCTGAAGCAAAGAGATCAACTCTTTGACATCATTAGGAGTGAGCGCTCCATGACTGATGCATCTATACATAAGGACCATGAATCTAATTTAAGGGTATTTACTGTGGGGAAAACAGATACATACTATGTGGATTCTACTGGAGCTTCTGTGACTTTAGATTCTAGTGTAAATCTTATCCACCGATACTGTGGAACACTTCCCCGAGATCAGTACTCCTCTGCAAAGCCCACTTATGATTTTCTGCCAGTGGAAGGGGGTTACCAATGTAAATTAACATTGCCATCTAATTCAGTCCTCCAGACAATAATTGGTCCATTAGGAAAACATATTCGTTTGGCAAGGCATCTTGCTTGTTTCGAAGCTTGTAAGAAGTTGCATCAAATGGGTGCTTTAAATGAACATTTGGTTCCATTCATCGAAGATGTTTCAGAAGATGACCATATCGTGAAAAATAAAGAATCTAGTTCAGGGGCAGGAACCACAAAGAGAAAGGAGTTACATGGAACAGCCAACATTTGTGCACTAAGTGGTGCATGGGGAGACAAACTTGATGTTGAAGCCAGATTTTTTGCCTACAAACTAGAATTCACATGTAGTATTGTTAACGAAATATACTCTGGGTTTGTTCTTTTGATTGAGTCAAAGCTTGATGATGATGTGGGAAATATTGAATCAGATCTTTATTTAGTCTCAAAGGTCGTGAAAGCTTCTGTCTCTTCATGTGGGCAAGTTGATTTGGATGCTAAACAGATGATGAAAGCAAAATGCTTCCATGAGCTTTTTTTCAATGGTTTGTTTGGTAGATTGGTGTTTAGGTCAAAATCAGCAGGAGGAGAAACAGAATTTTTACTACAAAAAGACACAAAATCATTATGGACAGCAAAACACTTATATTTGCTTCTACCACTTGAGAATTTGAATGGTATTTGTGAGGGAACCTTGCAAATTAATTGGCATGGAATTGATTCCTGTGCATCTGCTATTGAATTCTTAAGGAGAAGATATTCTTTGGTCACTGGAGATTGTGATGATAACGGAATAATCACATCACCTCAGGATACCAGTTCAATGGAGATGGAATATGTTGGAACAAACAAGATTCACTTTGCTAATTGTGTGCTTGATGCTGACAATATAAAAAACACGTTGGTTTTGGCGATTCATACTGGAAAAATATATTGTATTGTTGACATCGACAGTAACCTGTCTGCTGAAAGTCCTTTCTGTGGAAATAATGAAAAATCCAAGGAACGCTTTACCTACTCAGATTATTTCAGTAAAAGGTATGGGATTACCCTGAGACATCCAAGACATGCTCTATTACTATTAAAGCAAAGTCATAATCCACACAATCTTTTATTTAACTTTCATGAGGAAGATGCACGAGACAAATCATCACAAATTGGCTCTACAACCTCCAAAGTGCCTGCACATGTTCACGTCCCACCAGAGCTTTTATATGTTCTTGAATTTAAAAGAAACGTGTTGAGGTCATTGTACTTGTTGCCATCTCTAATGTACCGCATTGAATCATTAATGTTATCTAGTCAGCTTAGAGAAGAGATAGATGGTCAAACTAGCAAGTCCAACATAAATAGCTCACTGATTCTAGAGGCGCTTACAACTTTGAGATGCAGTGAAAATTTTTCAATGGAACGTCTTGAGTTGCTAGGAGATTCTGTTTTAAAGTATGTGGTGAGCTGTCACCTCTTTCTTAAATATCCCAAGAATCATGAAGGACATTTATCTGCCAAACGATCTCTAGCAGTTTGTAATTCAACCCTTCATAAATTGGCAATTGAACGTAAATTACAGGGTTATATTCGAGACTCTGCATTTGAACCACGACGTTGGGTTGCTCCAGGACAGCGTTCTATACACCCTGTTTCTTGTGATTGTGGATTGGAAACCCTTGAAGTGCCTTTAGATGTTAAATTCCACACTGAGGATCCCAAAGTTGTGGTTGGGAAGTTTTGTGACAGGGGTCACCGCTGGATGTGTTCTAAGACTATTTCTGACTGTGTTGAAGCTCTGATAGGAGCATACTATGTGGGGGGTGGACTATTTGCATCACTTAATGTGATGAAATGGCTTGGAATTGGAGCAGAACTTGAACTATCCTTGGTTGACGAAGCAATCACTGCTGCCTCTCTGCGTACTTGCATGCCAAAAGAAAGTGAGATTGCAAGCCTTGAAAAGAAAATTGGGTATGAATTTTCTGTCAAGGGACTCTTACTGGAGGCTATCACACATTTGTCTGAGAAAGAACTTGGGATTGGCTGCTGTTACGAGAGGCTTGAATTTCTTGGTGACTCAGTGTTGGACGTGCTTATCACATGGCATTTATATAAGAGTCACACAGATATTGATCCAGGGGTGTTGACTGACTTGCGATCTGCCTCTGTCAATAATGACAACTTTGCTCAAGTTGCTGTTAGACATAACCTTCACCAGCATCTCCTACATGGCTCAGGATTATTACTGAGCCAGATATCAGAATATGTGAAGGCCATTTCTGAATCGGATCCTAGATCACTTCCTAACATTAGAGCTCCGAAGGCACTTGGAGATCTAGTGGAAAGTATTGTTGGCGCAATGCTAATTGATTCCAAGCTCAGTCTAGACCGAGTGTGGGAGGTTTTCTGTCCTCTCTTATCCCCCATAGTTACACCTGAAAAACTTGAATTGCCCCCGTTTCGTGAATTAAATGAATTGTGCGATTCTCTTGGGTACTGTGTAAAAGTAAATGAAAACTGTGAAAAAAAGGGATCCATGATGCATGTTGAGGTTAGTGTACAGTTGCCAAATGATTTGTTGGTTCGTGAAGGAAAGGGGACAAATAAGAAAACTGCAAAAGGAGAAGCTTCTTTTCATTTGTTGAAGGACCTTGAGAAGCGGGGAATTTCATATTGTAATATCATGTCCAAGGGAAAAAGAGATAATTCTGTCCATATCAATGATTCACCTCATCTCAAAATGGATTCTAGTACTTGTTTTACTCTTAACGAAGAACATTCCTCAGAGTCGGTACATAAAAGGAACAGATTTGATGGAACTAACCCAACTGAAAGTATTTTGCCTCTCAAATACTCTTCTGGTGACGACTCTGGTTTTGGTGCTTCAATTCCAGTTAAGTTATCAATTAAAACGAAAAAGGGAGGACCACGGACCACACTATTTGAGGTGTGTAAGAAACTACAGTGGCCAGTGCCTGCATTTGCTTCAACAGAATATAAAGATAGATCTCTATTTGAATCCTGTGAAGGTCTGCAAGGAAGCAAGGGACTGAACTGTTTTGTTTCGAAAGTTACCTTGTGCATACCCAAGTATGGAAATATAGAGTGCCAAGGAGAAGCTAGAAGTGATAAGAAAAGCTCCTTTGACTCTGCTGCAGTTAAAATGCTTCTTGAGCTGCAAAAATTGGGAAAAGTTGAAATTGATCCTCCCCTTTCTAGTTAA 5013 0.3876 MNFNHDSLHHNQNQSKKRKQPDVDNYTSLELSASNMNPRSYQTEVFEVARRRNTIAVLDTGSGKTLIAVMIMKEVGQTIKSLGMKKLIVFLAPTVHLVNQQFNNIRYLTDFQVEEYYGAKGVDTWTLKTWEQKISNNDVLVMTPQILLDALRKAFVRMEMICLIVIDECHRATGNHPYTKIMKEFYHQVKEKPKIFGMTASPVGKRGVSSTADCEDQISELESILDSQRYTVEDRTEMSRYILSAKESCRFHDQARFSALSLKPKIEALWSKFDALLSENKSNYMDVENKFKTLSQRMSNELGKILHCLEDLGILCAYEAVKICHENFSKTEGTCEIYRTGYLQCINFVEDVIKLIEESLHCDDKNILGVDFDYSKAEDMGYLSPKLLELIKIFQSLGESSQVLCLIFVDRIITAKVIERFAKKVPQISHFSVSYLTGNSTSVDAVAPKRQKEILESFRSGKVNLLFTTDVLEEGIHVPNCSCVIRFDLPKTVRSYVQSRGRSRQANSQFVVMLERGNLKQRDQLFDIIRSERSMTDASIHKDHESNLRVFTVGKTDTYYVDSTGASVTLDSSVNLIHRYCGTLPRDQYSSAKPTYDFLPVEGGYQCKLTLPSNSVLQTIIGPLGKHIRLARHLACFEACKKLHQMGALNEHLVPFIEDVSEDDHIVKNKESSSGAGTTKRKELHGTANICALSGAWGDKLDVEARFFAYKLEFTCSIVNEIYSGFVLLIESKLDDDVGNIESDLYLVSKVVKASVSSCGQVDLDAKQMMKAKCFHELFFNGLFGRLVFRSKSAGGETEFLLQKDTKSLWTAKHLYLLLPLENLNGICEGTLQINWHGIDSCASAIEFLRRRYSLVTGDCDDNGIITSPQDTSSMEMEYVGTNKIHFANCVLDADNIKNTLVLAIHTGKIYCIVDIDSNLSAESPFCGNNEKSKERFTYSDYFSKRYGITLRHPRHALLLLKQSHNPHNLLFNFHEEDARDKSSQIGSTTSKVPAHVHVPPELLYVLEFKRNVLRSLYLLPSLMYRIESLMLSSQLREEIDGQTSKSNINSSLILEALTTLRCSENFSMERLELLGDSVLKYVVSCHLFLKYPKNHEGHLSAKRSLAVCNSTLHKLAIERKLQGYIRDSAFEPRRWVAPGQRSIHPVSCDCGLETLEVPLDVKFHTEDPKVVVGKFCDRGHRWMCSKTISDCVEALIGAYYVGGGLFASLNVMKWLGIGAELELSLVDEAITAASLRTCMPKESEIASLEKKIGYEFSVKGLLLEAITHLSEKELGIGCCYERLEFLGDSVLDVLITWHLYKSHTDIDPGVLTDLRSASVNNDNFAQVAVRHNLHQHLLHGSGLLLSQISEYVKAISESDPRSLPNIRAPKALGDLVESIVGAMLIDSKLSLDRVWEVFCPLLSPIVTPEKLELPPFRELNELCDSLGYCVKVNENCEKKGSMMHVEVSVQLPNDLLVREGKGTNKKTAKGEASFHLLKDLEKRGISYCNIMSKGKRDNSVHINDSPHLKMDSSTCFTLNEEHSSESVHKRNRFDGTNPTESILPLKYSSGDDSGFGASIPVKLSIKTKKGGPRTTLFEVCKKLQWPVPAFASTEYKDRSLFESCEGLQGSKGLNCFVSKVTLCIPKYGNIECQGEARSDKKSSFDSAAVKMLLELQKLGKVEIDPPLSS 1670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4599g00010 1670 Gene3D - 1579 1659 - -
Vium4599g00010 1670 Pfam Type III restriction enzyme, res subunit 36 202 IPR006935 GO:0003677|GO:0005524|GO:0016787
Vium4599g00010 1670 Gene3D Ribonuclease III domain 1034 1216 IPR036389 GO:0004525|GO:0006396
Vium4599g00010 1670 ProSiteProfiles Ribonuclease III family domain profile. 1246 1389 IPR000999 GO:0004525|GO:0006396
Vium4599g00010 1670 FunFam Endoribonuclease dicer-like 1 1240 1410 - -
Vium4599g00010 1670 SMART PAZ_2_a_3 869 1032 IPR003100 GO:0005515
Vium4599g00010 1670 FunFam Dicer-like 104 885 1005 - -
Vium4599g00010 1670 Gene3D Dicer dimerisation domain 568 665 IPR038248 -
Vium4599g00010 1670 FunFam Endoribonuclease dicer-like 1 377 540 - -
Vium4599g00010 1670 SUPERFAMILY RNase III domain-like 1245 1409 IPR036389 GO:0004525|GO:0006396
Vium4599g00010 1670 CDD RIBOc 1052 1216 IPR000999 GO:0004525|GO:0006396
Vium4599g00010 1670 SMART ultradead3 34 233 IPR014001 -
Vium4599g00010 1670 PANTHER DICER-RELATED 52 1490 - -
Vium4599g00010 1670 Pfam Helicase conserved C-terminal domain 392 503 IPR001650 -
Vium4599g00010 1670 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 389 544 IPR001650 -
Vium4599g00010 1670 ProSitePatterns Ribonuclease III family signature. 1282 1290 IPR000999 GO:0004525|GO:0006396
Vium4599g00010 1670 SMART helicmild6 419 506 IPR001650 -
Vium4599g00010 1670 MobiDBLite consensus disorder prediction 1 23 - -
Vium4599g00010 1670 Gene3D - 32 268 IPR027417 -
Vium4599g00010 1670 Gene3D paz domain 881 1006 - -
Vium4599g00010 1670 FunFam Dicer-like 104 1028 1217 - -
Vium4599g00010 1670 CDD RIBOc 1262 1410 IPR000999 GO:0004525|GO:0006396
Vium4599g00010 1670 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 573 663 IPR005034 GO:0016891
Vium4599g00010 1670 Pfam Dicer dimerisation domain 573 658 - -
Vium4599g00010 1670 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 514 IPR027417 -
Vium4599g00010 1670 SUPERFAMILY RNase III domain-like 1044 1223 IPR036389 GO:0004525|GO:0006396
Vium4599g00010 1670 Gene3D - 376 541 IPR027417 -
Vium4599g00010 1670 CDD DEXHc_dicer 36 234 - -
Vium4599g00010 1670 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 45 220 IPR014001 -
Vium4599g00010 1670 CDD SF2_C_dicer 382 514 - -
Vium4599g00010 1670 ProSiteProfiles Ribonuclease III family domain profile. 1033 1205 IPR000999 GO:0004525|GO:0006396
Vium4599g00010 1670 SMART riboneu5 1261 1412 IPR000999 GO:0004525|GO:0006396
Vium4599g00010 1670 SMART riboneu5 1052 1225 IPR000999 GO:0004525|GO:0006396
Vium4599g00010 1670 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1460 1483 IPR014720 -
Vium4599g00010 1670 ProSiteProfiles PAZ domain profile. 894 1008 IPR003100 GO:0005515
Vium4599g00010 1670 Pfam PAZ domain 893 1029 IPR003100 GO:0005515
Vium4599g00010 1670 FunFam Endoribonuclease dicer-like protein 33 272 - -
Vium4599g00010 1670 Pfam Ribonuclease III domain 1070 1204 IPR000999 GO:0004525|GO:0006396
Vium4599g00010 1670 Pfam Ribonuclease III domain 1282 1388 IPR000999 GO:0004525|GO:0006396
Vium4599g00010 1670 FunFam Endoribonuclease dicer-like 1 568 664 - -
Vium4599g00010 1670 Gene3D Ribonuclease III domain 1242 1412 IPR036389 GO:0004525|GO:0006396
Vium4599g00010 1670 SUPERFAMILY PAZ domain 894 1008 IPR036085 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4599g00010 Vium-Chr4599 48874 69389 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4599g00010 404 503 Eukaryotic Initiation Factors Gene Family AT3G19760 33.981 1.71e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4599g00010 K11592 - gmx:100806831 2743.38