Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4599g00004 ATGAGTTCTAAAAAGATTACATGGAAGTCTATTGTGTTGATCTTAAACTGTTACAAGACTCAAAGTTCCTTACAGGAATCAGAGAAACAGGTTTTGAAACAAGGTTCTTTCCAAAGGTTATGCCTCTCGGATATAAGCATTCCTAGCTCCCCTCAGGCCATTGAAGATCTTTCCATTTCCCTTGTTGGTCCAAAGCTTTACACATTCACCCTAGAGGAGCTAAGGGAAGCAACACATAATTTCTCATGGAGTAATCTTCTGGGTGAAGGAGGGTTCGGACCTGTGTACAAAGGTTTTGTTGATGACAAACTTAGGCCTGGTTTGAAGGCTCAGTCTGTAGCAGTAAAACAACTGAACTTGGATGGCTTCCAAGGTCACAGGGAGTGGCTGGCGGAGATTATATTTCTTGGACAGCTGAGGCATCCACATCTTGTTAAGTTAATTGGCTACTGTTGTGAGGAGGAGCACAGGCTTCTTGTGTATGAATACATGGCTAGAGGCAGCTTGGAGAATCAACTATTCAGAAGATACTCTGCTGCCTTGCCATGGTCAACCAGGATGAAGATTGCATTGGGTGCAGCTAAGGGTCTGGCCTTCCTTCACGAAGCAGATAAACCTGTAATATACAGAGATTTCAAAACTTCAAACATCTTACTTGACTCGGATTACACGGCTAAATTATCAGATCTTGGGCTAGCAAAAGATGGTCCTGAAGGGGAAGACACACATGTAACGACAACATGCATAATGGGAACCCGAGGCTATGCTGCCCCTGAGTACATCATGTCAGGTCACCTTTCCACCAAGAGTGATGTGTATAGCTATGGAGTCGTTTTGTTGGAATTGCTTACAGGAAGAAGGGTAGTGGATAAGTGCCGACCCAATAGAGAACGAACCCTTGTGGAATGGGCAAGGCCTCTTTTGAGAGATCAAAGAAAGTTGCACCATATAATAGACCCTAGATTAGAAGGGCAGTTTCCTAGGAAAGGAGCTTTGAAGGTTGCTGCATTGACCTATAAATGTTTGAGCCACCACCCCTATCCAAGGCCAGCTATGAGTGATGTGGTTAAGATACTAGAGTCTCTTCAGGATTTTGACGATGTGATCATAGGACCATTTGTGTATGTTGCAGTGAGTGAAAGTAGCCAATGA 1152 0.4384 MSSKKITWKSIVLILNCYKTQSSLQESEKQVLKQGSFQRLCLSDISIPSSPQAIEDLSISLVGPKLYTFTLEELREATHNFSWSNLLGEGGFGPVYKGFVDDKLRPGLKAQSVAVKQLNLDGFQGHREWLAEIIFLGQLRHPHLVKLIGYCCEEEHRLLVYEYMARGSLENQLFRRYSAALPWSTRMKIALGAAKGLAFLHEADKPVIYRDFKTSNILLDSDYTAKLSDLGLAKDGPEGEDTHVTTTCIMGTRGYAAPEYIMSGHLSTKSDVYSYGVVLLELLTGRRVVDKCRPNRERTLVEWARPLLRDQRKLHHIIDPRLEGQFPRKGALKVAALTYKCLSHHPYPRPAMSDVVKILESLQDFDDVIIGPFVYVAVSESSQ 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4599g00004 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Vium4599g00004 383 Pfam Protein tyrosine and serine/threonine kinase 84 359 IPR001245 GO:0004672|GO:0006468
Vium4599g00004 383 FunFam Serine/threonine-protein kinase PBS1 164 368 - -
Vium4599g00004 383 Gene3D Phosphorylase Kinase; domain 1 46 163 - -
Vium4599g00004 383 ProSiteProfiles Protein kinase domain profile. 81 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4599g00004 383 FunFam Serine/threonine-protein kinase BIK1 48 163 - -
Vium4599g00004 383 PANTHER OS01G0588500 PROTEIN-RELATED 34 363 - -
Vium4599g00004 383 SUPERFAMILY Protein kinase-like (PK-like) 57 361 IPR011009 -
Vium4599g00004 383 CDD STKc_IRAK 87 362 - -
Vium4599g00004 383 Gene3D Transferase(Phosphotransferase) domain 1 164 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4599g00004 Vium-Chr4599 16674 18676 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4599g00004 68 359 Glycoside Hydrolase AT3G07070 52.542 3.16e-100 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium4599g00004 PK_Tyr_Ser-Thr 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4599g00004 - - gmx:100805771 708.368