Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4593g00023 ATGGACAACGAGATCGATGTTCCTTCGTTCTTCGTCTGCCCCATTTCCTTAGAAATCATGAAGGATCCGGTGACGGTCTCAACGGGCATCACCTACGACCGTGAAAGCATCGAAACGTGGCTGTTTTCCAAGAAAAATACCACATGCCCCGTCACCAAACAACCCTTGATGGATTACACCGATCTCACCCCTAACCACACTCTTCGGAGACTCATCCAAGCCTGGTGTACCATGAACGCTTCTCACGGCATCGAAAGGATCCCAACTCCAAAACCTCCCGTTAACAGGACACAGATTACCAAGCTTCTCAAAGACGCTTCTCACTCCCCTCTCGTATGCCTACGAAGACTCAAATCCATCGCTTCAGGAAGCGAGACAAATAAGCGATGCATGGAGGCTGCGGGTGCTGTTGAGTTCCTCGCATCCATTGTAATGAACAACAACAGCAACAGCAACGATTCTTCAAATGGGGCTGACCCAAATGATGGATCTGGATTCGAGTTGAAAACAACTGCAAGCGATGAAGCATTGAGCCTGCTTCACACGCTTGATTTAACTGAACAAGGGTTGAAGACTCTTCTTGGCTTCAGAAACGGAGATTTTATTGACTCTTTGACGAGAGTCATGCAGAAAGGGTTCTTTGAATCACGCGCTTATGCAGTTTTCTTGTTGAAATCTATGTCTGAAGTGGCTGATCCAGTGCAACTGTTGCATCTAAGACAAGAAATTTTCGTGGAACTAGTACAAGTCTTGAGGGATCAGATTTCAACGAAGACATCAAAGGATATCCTTCAAACCTTAATCCAATTCTCTCCTTGGGGGAGGAACAGGGTCAAGGCTGTGGAAGCAGGAGCAGTGCCTGTTTTGATAGAGCTTCTTCTGGATTGCAAGGATAGAAAGCCTTGCGAGATGATGCTGGTGCTGTTGGAGATACTATGCCAGTGTGCGGAGGGAAGAGCAGAACTATTGAGTCATGGAGCAGGTCTTGCCATTGTTTCAAAGAAGATTCTAAGAGTTTCGACATTGGCGAATGATAGGGCTGTTAGGATTCTTCTTTCTGTCTCCAAGTTCTCTGCGACTCCACACGTTGTTCAAGAGATGCTGAAACTGGGTGTGGCAGCGAAACTGTGCTTGGTGCTTCAGGTGGATAGCGGAAACAAGGCCAAGGAAAAGGCAAGAGAGATACTCAAGTTGCATGCTCGGGCGTGGAAGAATACTCCATGCATACCCAACAATTTGCTTTCTTCATACCCGGCTTATGCGTGA 1266 0.47 MDNEIDVPSFFVCPISLEIMKDPVTVSTGITYDRESIETWLFSKKNTTCPVTKQPLMDYTDLTPNHTLRRLIQAWCTMNASHGIERIPTPKPPVNRTQITKLLKDASHSPLVCLRRLKSIASGSETNKRCMEAAGAVEFLASIVMNNNSNSNDSSNGADPNDGSGFELKTTASDEALSLLHTLDLTEQGLKTLLGFRNGDFIDSLTRVMQKGFFESRAYAVFLLKSMSEVADPVQLLHLRQEIFVELVQVLRDQISTKTSKDILQTLIQFSPWGRNRVKAVEAGAVPVLIELLLDCKDRKPCEMMLVLLEILCQCAEGRAELLSHGAGLAIVSKKILRVSTLANDRAVRILLSVSKFSATPHVVQEMLKLGVAAKLCLVLQVDSGNKAKEKAREILKLHARAWKNTPCIPNNLLSSYPAYA 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4593g00023 421 ProSiteProfiles U-box domain profile. 6 82 IPR003613 GO:0004842|GO:0016567
Vium4593g00023 421 SMART Ubox_2 10 75 IPR003613 GO:0004842|GO:0016567
Vium4593g00023 421 FunFam RING-type E3 ubiquitin transferase 1 85 - -
Vium4593g00023 421 SUPERFAMILY RING/U-box 4 83 - -
Vium4593g00023 421 CDD RING-Ubox_PUB 8 58 IPR045210 -
Vium4593g00023 421 Pfam U-box domain 7 79 IPR003613 GO:0004842|GO:0016567
Vium4593g00023 421 Gene3D - 98 406 IPR011989 -
Vium4593g00023 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Vium4593g00023 421 PANTHER WDSAM1 PROTEIN 4 410 IPR045185 GO:0061630
Vium4593g00023 421 SUPERFAMILY ARM repeat 113 333 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4593g00023 Vium-Chr4593 198887 200396 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4593g00023 1 419 U-box Gene Family AT3G52450 57.727 7.62e-176 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4593g00023 - - gmx:100811258 733.406