Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4593g00021 ATGGCGACATACTTTCATCATGGTAACTCCGAAATCCAATCAGGTGCCGCCGACGGACTCCAAACTCTTGTCCTCATGAACCCAGGCTACATCCACTACTCCGACGCACCGTCACAGCCCCCTCCCTCACACGCTGCGGGAAATCTCGTGTTTCTCAACCCCGCCGCAGTTGCCGGCGCCAACAGCAACGGCTCCTTCAACCCTCACGCGCCGCCCTCTCACACCCAACAATTCGTTGGAATCCCCCTCCCCGCTTCCCAGGACCTCAACCACCACTCCATGCACGGGCACCACGATGTCTCGGCACTGCATGGCTTCCTCCCGCGCATGCAGTACAATCACTGGAACGCATTAGACCCGGCTTCGGCGGCGCGTGATACCCCACGCGCGCAGCAGGGCTTGTCTCTGGGGCTGGGGTCGTTCCGAGAGGGTCAGGCCCCGGGCATGTCCGGCGACGACTTGCGCGTGTCAGGGGGTTCGCCGTCGTCGGCGTCTGGGGTTACCAATAATGGAGCATCGGGCATTCAGAGCGTTTTCCTGAGCTCAAAGTACTTGAAGGCAGCGCATGAGCTTCTGGAAGAGGTCGTGAATGTTAACAATGGGATTGGCACCGAGTTGGGTAAAAAGAGTGGGGGACAGACGAAGGTGATTGGAGAATCATCCGCGGCAGGTAGTGGAGATGGTTCAGTTGGTGGGGAAGGGAACGGAAAACGTAACTCTGAGCTATCAACTGCAGAAAGACAAGAAATTCAGATGAAGAAAGCCAAACTGATTGCCATGCTTGATGAGGTGGAGCAAAGGTACAGGCAGTACCACCAGCAGATGGAGATTGTGGTGTCATCATTTGAGCAAGCTGCGGGGATTGGGTCTGCGAGAACATACACGGCTCTTGCATTGCAAACAATCTCTAAGCAGTTTCGTTGTTTGAAAGATGCTATTGCAGGGCAGGTTCGAGCTGCTAACAAGAGTTTAGGAGAAGAAGATTGCTTTGGAGGGAAAATAGAAGGTTCGAGGCTCAAATATGTGGACCATCATCTGAGGCAACAACGAGCTCTCCAACAATTGGGAATGATCCAGCACAATGCTTGGAGACCCCAGAGGGGATTGCCTGAAAGATCTGTTTCTGTTCTTCGTGCCTGGCTCTTCGAACACTTCCTCCACCCTTATCCCAAGGACTCGGACAAACACATGTTGGCAAAGCAAACAGGGCTAACAAGGAGCCAGGTCTCAAATTGGTTTATAAATGCTCGGGTTCGGCTTTGGAAGCCAATGGTGGAGGAAATGTACTTGGAAGAAATGAAGGATCATGAACAGAAGGGATCTGAGGATAAATCAAGCAAGAGCAATGAAGATTCTTCAACGAAAATGGCAGCTCCAGCAGAGAAAGGTCCTTCGAATGAAACCGAGGCTAAAAGTTTCAGTTCCAAACAAGAAGTTTCAAAGAGCCAGAACACTGCTATGGTTTCAGTTTCTAGACCATCAACGTCACCACTTGGTGGGAGTGTGAGAAACCAATCAGGATTCAGCTTCATGGGGTCTTCAGAGCTGGAAGGGATCACACAAGGAAGTCCAAAGAAAGCAAGGAATCATGAGATGATGCATTCCCCAAATAGTGTCCCTTCAATGAACATTGATGTGAAGCCCAATGAGGCAAACAATGAGCAACTCTCAATGAAATTTGGTGACGAAAGGCAAGGCAGAAACGAATCCTCTTTCATGGGAAACCAAACAAACTTCATCGGTGGTTTTGGACAGTACCCAATTGGGGATATTGGAAGGTTTGATGCAGAGCAGTTTGCTCCAAGGTTTTCAGGTAATGGTGTTTCCCTCACTCTTGGTCTTGATTCATTACCCGGAACCCATCAAACATTCCTCCCAAACCAAAACATTCAACTGGGTAGAAGCTTGGACATTGGTGAACCAAATGAGTTTGGTATCATAAACAATTCCTCTCCTCACTCTTCAGCTGCTTATGAGAGTATCAGCATGCAAAACCCAAAGAGGTTTGCTGCACAATTGTTGCCAGACTTTGTGACCTGA 2040 0.5 MATYFHHGNSEIQSGAADGLQTLVLMNPGYIHYSDAPSQPPPSHAAGNLVFLNPAAVAGANSNGSFNPHAPPSHTQQFVGIPLPASQDLNHHSMHGHHDVSALHGFLPRMQYNHWNALDPASAARDTPRAQQGLSLGLGSFREGQAPGMSGDDLRVSGGSPSSASGVTNNGASGIQSVFLSSKYLKAAHELLEEVVNVNNGIGTELGKKSGGQTKVIGESSAAGSGDGSVGGEGNGKRNSELSTAERQEIQMKKAKLIAMLDEVEQRYRQYHQQMEIVVSSFEQAAGIGSARTYTALALQTISKQFRCLKDAIAGQVRAANKSLGEEDCFGGKIEGSRLKYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEMKDHEQKGSEDKSSKSNEDSSTKMAAPAEKGPSNETEAKSFSSKQEVSKSQNTAMVSVSRPSTSPLGGSVRNQSGFSFMGSSELEGITQGSPKKARNHEMMHSPNSVPSMNIDVKPNEANNEQLSMKFGDERQGRNESSFMGNQTNFIGGFGQYPIGDIGRFDAEQFAPRFSGNGVSLTLGLDSLPGTHQTFLPNQNIQLGRSLDIGEPNEFGIINNSSPHSSAAYESISMQNPKRFAAQLLPDFVT 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4593g00021 679 Gene3D - 366 446 - -
Vium4593g00021 679 MobiDBLite consensus disorder prediction 467 520 - -
Vium4593g00021 679 CDD homeodomain 363 424 IPR001356 GO:0003677
Vium4593g00021 679 SMART prehox3 173 315 IPR006563 -
Vium4593g00021 679 MobiDBLite consensus disorder prediction 156 170 - -
Vium4593g00021 679 Pfam Associated with HOX 180 314 IPR006563 -
Vium4593g00021 679 Coils Coil 247 274 - -
Vium4593g00021 679 SUPERFAMILY Homeodomain-like 364 430 IPR009057 -
Vium4593g00021 679 MobiDBLite consensus disorder prediction 207 245 - -
Vium4593g00021 679 SMART HOX_1 363 427 IPR001356 GO:0003677
Vium4593g00021 679 MobiDBLite consensus disorder prediction 434 450 - -
Vium4593g00021 679 Pfam Homeobox KN domain 380 419 IPR008422 GO:0003677|GO:0006355
Vium4593g00021 679 MobiDBLite consensus disorder prediction 142 170 - -
Vium4593g00021 679 ProSiteProfiles 'Homeobox' domain profile. 360 423 IPR001356 GO:0003677
Vium4593g00021 679 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 88 450 - -
Vium4593g00021 679 FunFam BEL1-like homeodomain protein 9 366 428 - -
Vium4593g00021 679 MobiDBLite consensus disorder prediction 434 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4593g00021 Vium-Chr4593 171696 176168 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4593g00021 1 678 Homeobox Transcription Factor Family AT2G35940 50.270 1.53e-176 517
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vium4593g00021 POX 8.9e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4593g00021 - - gmx:100810901 1217.22