Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4593g00015 ATGCTCCACTCTTCGCTAACTTTCTTCTTCATTCTCCTCTTTTCCCTCACCACTGCCGACCCGCACGACGCCGAAATACTGCGCCAATTCCGAAAAGGGTTGGACGACCCGGAACTGTTGCCATGGCCGGACACCGGCGATGACCCGTGTGGTTGGAAGTACATTTTCTGCGACAATAAGAACCGCGTGAACCAGATTCAGGCCAAGGGGTTGAACCTGAGCGGTCCTCTTCCGCAGAACCTGAACCAGCTCACGAATCTCTTCAACGTGGGCCTCCAGAACAACAGGCTCAACGGCCCATTGCCTTCCTTCCGCGGCCTGTCAAATCTCAAATACTTGTATCTTGACAACAACAACTTCGACTCCATACCTTCAGATTTCTTCGATGGGCTCCAGAGTTTGGAAGTGCTCGCCTTGGATAATAATAAACTTAACGCCAGCTCCGGCGGCTGGCACTTACCGCAAACGCTCCAGGGTTCAACGCAGTTGACCAATCTCTCCTGTATGGGCTGCAACCTCGCCGGTCCATTGCCCGAGTTTCTCGGAACAATGAACTCGCTGTCGTTTTTGAAGCTCTCCAACAACAACTTGACGGGCGAGATTCCCCCGAGTCTAAACGGCTCTGCGTTGCAGGTTCTCTGGCTGAATAACCAGAAGGGGGAGCTTCTTACTGGAAGAATTGACGTTGTGGCCTCCATGGTTTCACTCACGAGTTTGTGGCTTCACGGGAACGCATTTACTGGAACGATTCCTGATAACATTGGGGATTTGAGCTCCCTACGGGATCTTAACCTTAATAAGAACAACCTCGTTGGGTTGGTTCCTCAAGGTTTGGGTGACCTGAAGCTCGACAAACTGGACTTGAACAACAACCATTTTATGGGTCCGATTCCCAATTTTAAAGCGGCTCAAGTGTCTTATACTTATAACGATTTTTGTGTGAACAAGTCAGGGGTTCCTTGCGCGTTTGAGGTGATGGCGCTGTTGGGGTTCCTTGGGGGGTTGAATTATCCTGAGAATTTGGTTGACTCGTGGAGTGGGAATGATCCTTGTGGGGGTCAGTGGTTGGGGATAGAGTGTAATGTTGATGGAAAGGTGAATGTGATTAATTTGCCTAATATGAATCTTAATGGGAGTTTAAGTCCTTCTGTTGCGAACTTGGTTTCTCTTGTTGAGATTAGGTTGGGGGGGAATGATATTAGTGGTGCGGTGCCTGGTAATTGGAGTAGTTTGACATCTTTGACATTGTTGGATCTGAGTGGCAATAACATTTCTCCTCCATTGCCTTTGTTTAAGACTGGATTGAAACCTATTGTTACTGGGAATCCTCTCTTCAATGGTGGTGCGGAAAATCCTTCATCAGGGAGCAAGAACCCATCATCTGGATCTGTTAATGTCGACCCTGCATCGGGTCAGTCCAATTCTAGTTCGAGTGATTCTCGTGAAACTAAGAAATCTAAACGGAAAGGGTTGGTTTCCATCGTTGCTCCGATTGCGGGAGTGGCAGCTGCGGCTTTTCTGCTCATTCCACTCTATGCATATTGTTTCAAGAGGACGAAGGGTGGCTTCCAGGCACCAACCTCACTGGTAATTCACCCTAGGGATCCATCGGATTCGGACAGTGTTGTGAAGATTGCTGTTGCTAACAATACAAATGGAAGCATTTCCAATTTGACAGGGAGTGGTTCTGGGAGTAGGCACAGCAGTGGAATTGGGGAGTCTCATGTCATTGACGCTGGAAATCTTAGAATATCGGTCCAAGTTCTCAGGAACGTGACCAAGAATTTTGCGCCCGAGAACGAGCTTGGCCGTGGTGGATTTGGAGTTGTTTATAAGGGAGAGTTGGAGGATGGAACTAAAATTGCAGTGAAACGAATGGAAGCTGGTGTGATTAGTAGCAAGGCATTGGATGAATTCCAGGCCGAGATTGCGGTTCTATCAAAAGTCCGGCACCGGCATCTGGTTTCTCTTTTGGGTTATTCTATAGAAGGTAATGAAAGGATTCTGGTGTATGAATATATGCCACAAGGGGCTCTAAGTAAGCATCTTTTCCATTGGAAAAGCCTTGAACTGGAGCCACTCTCTTGGAAGAGGAGGCTCAATATTGCATTGGATGTTGCCAGAGGGATGGAGTATCTTCATACTCTGGCTCACCAGAGCTTCATTCACAGAGATCTTAAGCCGTCAAATATCTTGCTTGCTGATGATTTCAGAGCAAAGGTCTCAGATTTTGGTTTGGTAAAACTTGCTCCTGAAGGTGAAAAATCTGTAGTTACCAGGCTTGCTGGGACTTTCGGATATTTGGCGCCAGAATATGCAGTGACAGGAAAAATCACTACAAAAGCGGATGTTTTCAGTTTTGGGGTTGTGCTAATGGAGCTATTGACTGGATTAATGGCACTTGACGAGGACAGACCTGAGGAAAGCCAATACTTAGCAGCATGGTTCTGGCATATAAAATCAGATAAGAAGAAGCTAATGGCTGCTATTGACAAAGCCCTTGATGTTAAGGAAGAAACATTTGAGAGCATCTCCATCATTGCTGAGTTAGCAGGGCACTGCACTGCCAGAGAACCGAGCCAACGGCCAGAGATGGGTCATGCCGTAAATGTGCTGGCACCGCTTGTTGAAAAATGGAAACCCTTTGATGATGACACTGAGGAGTATTCTGGGATCGATTATAGCCTTCCCCTTAACCAGATGGTGAAGGGATGGCAAGAGGCAGAAGGAAAGGACATGAGTTATATGGACCTAGAAGACAGTAAGAGCAGTATCCCCGCAAGGCCTACCGGATTTGCAGATTCTTTTACTTCAGCTGATGGCCGTTAA 2829 0.4726 MLHSSLTFFFILLFSLTTADPHDAEILRQFRKGLDDPELLPWPDTGDDPCGWKYIFCDNKNRVNQIQAKGLNLSGPLPQNLNQLTNLFNVGLQNNRLNGPLPSFRGLSNLKYLYLDNNNFDSIPSDFFDGLQSLEVLALDNNKLNASSGGWHLPQTLQGSTQLTNLSCMGCNLAGPLPEFLGTMNSLSFLKLSNNNLTGEIPPSLNGSALQVLWLNNQKGELLTGRIDVVASMVSLTSLWLHGNAFTGTIPDNIGDLSSLRDLNLNKNNLVGLVPQGLGDLKLDKLDLNNNHFMGPIPNFKAAQVSYTYNDFCVNKSGVPCAFEVMALLGFLGGLNYPENLVDSWSGNDPCGGQWLGIECNVDGKVNVINLPNMNLNGSLSPSVANLVSLVEIRLGGNDISGAVPGNWSSLTSLTLLDLSGNNISPPLPLFKTGLKPIVTGNPLFNGGAENPSSGSKNPSSGSVNVDPASGQSNSSSSDSRETKKSKRKGLVSIVAPIAGVAAAAFLLIPLYAYCFKRTKGGFQAPTSLVIHPRDPSDSDSVVKIAVANNTNGSISNLTGSGSGSRHSSGIGESHVIDAGNLRISVQVLRNVTKNFAPENELGRGGFGVVYKGELEDGTKIAVKRMEAGVISSKALDEFQAEIAVLSKVRHRHLVSLLGYSIEGNERILVYEYMPQGALSKHLFHWKSLELEPLSWKRRLNIALDVARGMEYLHTLAHQSFIHRDLKPSNILLADDFRAKVSDFGLVKLAPEGEKSVVTRLAGTFGYLAPEYAVTGKITTKADVFSFGVVLMELLTGLMALDEDRPEESQYLAAWFWHIKSDKKKLMAAIDKALDVKEETFESISIIAELAGHCTAREPSQRPEMGHAVNVLAPLVEKWKPFDDDTEEYSGIDYSLPLNQMVKGWQEAEGKDMSYMDLEDSKSSIPARPTGFADSFTSADGR 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4593g00015 942 FunFam receptor protein kinase TMK1 674 891 - -
Vium4593g00015 942 ProSiteProfiles Leucine-rich repeat profile. 109 130 IPR001611 GO:0005515
Vium4593g00015 942 SMART serkin_6 596 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4593g00015 942 ProSiteProfiles Protein kinase domain profile. 596 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4593g00015 942 MobiDBLite consensus disorder prediction 446 479 - -
Vium4593g00015 942 Pfam Protein kinase domain 599 870 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4593g00015 942 FunFam receptor protein kinase TMK1 558 673 - -
Vium4593g00015 942 MobiDBLite consensus disorder prediction 916 942 - -
Vium4593g00015 942 FunFam Receptor-like kinase TMK4 21 318 - -
Vium4593g00015 942 Gene3D Ribonuclease Inhibitor 20 319 IPR032675 -
Vium4593g00015 942 Gene3D Phosphorylase Kinase; domain 1 561 673 - -
Vium4593g00015 942 PANTHER OSJNBA0070M12.3 PROTEIN 6 942 - -
Vium4593g00015 942 Pfam Leucine rich repeat N-terminal domain 21 58 IPR013210 -
Vium4593g00015 942 Pfam Leucine rich repeat N-terminal domain 325 361 IPR013210 -
Vium4593g00015 942 ProSitePatterns Protein kinases ATP-binding region signature. 602 624 IPR017441 GO:0005524
Vium4593g00015 942 SMART LRR_typ_2 411 433 IPR003591 -
Vium4593g00015 942 SMART LRR_typ_2 257 280 IPR003591 -
Vium4593g00015 942 SMART LRR_typ_2 131 159 IPR003591 -
Vium4593g00015 942 SMART LRR_typ_2 184 208 IPR003591 -
Vium4593g00015 942 SMART LRR_typ_2 107 130 IPR003591 -
Vium4593g00015 942 SMART LRR_typ_2 233 256 IPR003591 -
Vium4593g00015 942 ProSitePatterns Serine/Threonine protein kinases active-site signature. 721 733 IPR008271 GO:0004672|GO:0006468
Vium4593g00015 942 Gene3D Ribonuclease Inhibitor 323 443 IPR032675 -
Vium4593g00015 942 FunFam Leucine-rich repeat receptor-like kinase 323 447 - -
Vium4593g00015 942 Gene3D Transferase(Phosphotransferase) domain 1 674 892 - -
Vium4593g00015 942 SUPERFAMILY L domain-like 20 301 - -
Vium4593g00015 942 MobiDBLite consensus disorder prediction 443 486 - -
Vium4593g00015 942 SUPERFAMILY Protein kinase-like (PK-like) 575 872 IPR011009 -
Vium4593g00015 942 CDD STKc_IRAK 602 875 - -
Vium4593g00015 942 SUPERFAMILY L domain-like 324 435 - -
Vium4593g00015 942 Pfam Leucine rich repeat 235 293 IPR001611 GO:0005515
Vium4593g00015 942 Pfam Leucine rich repeat 108 151 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4593g00015 Vium-Chr4593 79073 82660 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4593g00015 81 909 Receptor kinase-like Gene Family AT1G55610 30.479 1.99e-81 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vium4593g00015 PK_Tyr_Ser-Thr 9.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4593g00015 K00924 - gmx:100305366 1578.53