Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4593g00005 ATGACGGCATGGCTGGTGGTGCTACTCGCAGATCGAAAGGAACTAAGGAAGCTCCAACACGAGGGAGAAGGATTCTTCAAGAAACTACTGCAATTCGCTGCCAATGTCAGGGTCGTCGTTAAAGTCGTTGATGTTGCTTCCCTTTTCCTCCTCAGCGCATCCTCTTCCCCAATCCCTAGGGTTTCACAAGCCACCATGGATCTCCCTTCCCAAGTCGTGAAGCCATGGTGCTGCAACCTCACCTTTTCCTTCGTGTCAGAGTCGAACGTGATCGCCAACCTTACTACACCTCTGCCATGCTGTGTTATGATTGACGATGTTGGATTGAGAATTAGGTTTGTGATGTTGAACATTGGAGTGGATGAAGAAGAGGTGTTGAAATGGAGAGGAATAAATGTTTTTATTAAAAGAATAAAGAAGAGCTGCTTCACGGGTCGGTCATCTGAACAAGAGAGATTGACTGTGAAGTTTTGGCGGGAAGCTGACATTCTTTCCAAGCTTCATCATCCAAATGTGGTTGCATTTTATGGTGTGGTACAGCATGGACCAGGTGGTACAATGGCCACTGTGGCAAAATATATGGTGGATGGTTCTCATAGGCATGTATATCTTGATCGTCGGAAGAGGCTGATAATTGCAATGGATGCAGCTTTTAGAATGGAATATTTGCACTCGAAAAACATTGTGCATTTTGACTTAAAATGTGACAATTTGCTTGTAAACTTGAAAGATCCTTTACGTCCAATACGCAAGGTTGGTGATTTTGGCTTATCAAAAATTAAGAGAAATACTTTGGTTACTGGTGTGCGTGGGACACACTACCTTGAATGGCACCAGCTTCTGAATGGCCGCAGCAATAAGGTCTCAGAAAAGGTTGATGTGTTCTCCTTTGGCATTGTATTATGGGAAATTCTTATTAATGTGTAA 927 0.4347 MTAWLVVLLADRKELRKLQHEGEGFFKKLLQFAANVRVVVKVVDVASLFLLSASSSPIPRVSQATMDLPSQVVKPWCCNLTFSFVSESNVIANLTTPLPCCVMIDDVGLRIRFVMLNIGVDEEEVLKWRGINVFIKRIKKSCFTGRSSEQERLTVKFWREADILSKLHHPNVVAFYGVVQHGPGGTMATVAKYMVDGSHRHVYLDRRKRLIIAMDAAFRMEYLHSKNIVHFDLKCDNLLVNLKDPLRPIRKVGDFGLSKIKRNTLVTGVRGTHYLEWHQLLNGRSNKVSEKVDVFSFGIVLWEILINV 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4593g00005 308 Pfam Protein tyrosine and serine/threonine kinase 131 305 IPR001245 GO:0004672|GO:0006468
Vium4593g00005 308 SMART serkin_6 123 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4593g00005 308 ProSiteProfiles Protein kinase domain profile. 15 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4593g00005 308 PANTHER SERINE-THREONINE PROTEIN KINASE 134 305 - -
Vium4593g00005 308 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672|GO:0006468
Vium4593g00005 308 Gene3D Transferase(Phosphotransferase) domain 1 120 307 - -
Vium4593g00005 308 SUPERFAMILY Protein kinase-like (PK-like) 127 306 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4593g00005 Vium-Chr4593 38700 40014 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4593g00005 127 305 MAP Kinase Kinase Kinase AT1G16270 80.319 2.54e-94 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vium4593g00005 PK_Tyr_Ser-Thr 4.2e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4593g00005 - - vum:124838453 598.201