Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4593g00004 ATGGCTGATAAGCAACCCCACTTGAATGGTGCTTATTACGGTCCCGCCATTCCCACAGCCGAACCACCACGCTACCGCCCTCAACGCGGAAGAGGCTGCTGTTGCTGCCTCTTCGGAATCTTGTGGAAGATTCTGGTTGCACTCATCGTCCTCGTTGGCCTCGCAATCCTCGTATTCTGGCTGGTTGTTCAACCCCGTTCCTTCAAGTTCCATGTCACGGAAGCCGACCTAACCCAATTCGACTATAACGCCGACAACAGCACCCTCCACTACAACATGGTCCTGAACTTCACCGCACGCAACCCCAACAAAAAACTGAACATCTACTACGACAAAGTGGAAGCATTGGCATTCTACGAGGATGCCAGATTCTCCAATCACGATGTGATAACGCACATGAACTCGTTCAGGCAGTACACGAAGAGCAGCAGCCCCATGAGCGCTGTTTTCTCAGGGCTGAAGGTGGTGACACTAAACAATGAACAAGTGTCTGAGTTGAACGAAGACAAGAGCGATGGCGTTTACGAATTCTATGTGAGGCTGAACTTCAGGATTCGATACAGACTCGGGGATGTCATCTCTGGTGACTTCAAACCCAAGGTCAAATGTCATATCAAGGTTCCCTTCCCTAACAATGCCTCTCAAACTTTTCAGACCACCAAGTGCGACGTCGATTACTAG 681 0.5007 MADKQPHLNGAYYGPAIPTAEPPRYRPQRGRGCCCCLFGILWKILVALIVLVGLAILVFWLVVQPRSFKFHVTEADLTQFDYNADNSTLHYNMVLNFTARNPNKKLNIYYDKVEALAFYEDARFSNHDVITHMNSFRQYTKSSSPMSAVFSGLKVVTLNNEQVSELNEDKSDGVYEFYVRLNFRIRYRLGDVISGDFKPKVKCHIKVPFPNNASQTFQTTKCDVDY 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4593g00004 226 PANTHER OS05G0367900 PROTEIN 32 209 IPR044839 GO:0098542
Vium4593g00004 226 Pfam Late embryogenesis abundant protein 97 203 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4593g00004 Vium-Chr4593 21422 22379 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4593g00004 62 216 SNARE and Associated Proteins AT1G32270 29.677 3.63e-19 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4593g00004 - - gmx:100807701 386.726