Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4593g00003 ATGGCCGATAAGCAACCCCACTTGAATGGTGCTTATTATGGTCCCGCCATTCCCACAGCGGAACCACCACGCTACCGCCCTCAACGCGAAAGAGGCTGCTGTTGCTGCCTCTTCGGAATCTTGTGGAAGATTCTGGTTGTACTCATAGTTCTCGTTGGCCTGGCAATCCTCATATTCTGGCTGGTTGTTCAACCCCGCTCCTTCAAGTTCCATGTCACGGAAGCCGACCTAACCCAATTCGAGTACAACGCCAACAACAGCACCCTCGACTACAACATGGTCCTGAACTTCACCGCACGCAACCCCAACAAAAAACTGAACATCTACTACGACAAAGTGGAAGCATTGGCATTCTACGAGGATGCCAGATTCTCCAATCACGATGTGATAACGCACCTGAACTCGTTCAGGCAGTACACGAAGAGCAGCAGCCCCATGAGCGCTGTTTTCTCAGGCCAGCAGGTGGTGACACTAAACAATGAACAAGTGTCTGAGTTGAACGAAGACAAGAGTGGTGGCGTTTACGAATTCTACGTGAGGCTCAACTTCAGGATTCGATACAGACTTGGGGATGTCATCTCTGGTGACTTCAAACCCAAGGCCAAATGTCATATCAAGGTTCCCTTAGCTAACAATGCCTCTCAAACTTTTCAGACCACCAAGTGCGACATCGATTACTAG 681 0.4963 MADKQPHLNGAYYGPAIPTAEPPRYRPQRERGCCCCLFGILWKILVVLIVLVGLAILIFWLVVQPRSFKFHVTEADLTQFEYNANNSTLDYNMVLNFTARNPNKKLNIYYDKVEALAFYEDARFSNHDVITHLNSFRQYTKSSSPMSAVFSGQQVVTLNNEQVSELNEDKSGGVYEFYVRLNFRIRYRLGDVISGDFKPKAKCHIKVPLANNASQTFQTTKCDIDY 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4593g00003 226 Pfam Late embryogenesis abundant protein 97 198 IPR004864 -
Vium4593g00003 226 PANTHER OS05G0367900 PROTEIN 31 211 IPR044839 GO:0098542
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4593g00003 Vium-Chr4593 15185 16124 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4593g00003 62 216 SNARE and Associated Proteins AT1G32270 30.323 3.18e-20 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4593g00003 - - gmx:100807701 381.333