Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4592g00001 ATGAGGAAACAGAGGCACTTGGAAGGTCTGGTTGCAACGGTGGCCCAGCTCAAGAATGAGAATCAGCGTATTATCCAATCAATCAATATCGCTAACCAACGTATGAAGAATTCTGAAATTGATAACTCAGTTCTGAGAGCAGAAATGACTAAGTTGAGCTCTAGGCTTTGGAGCTTAAGATTCTATGATGTGTTTTTGAGTTTCAGAGGGGAAGATACGCCTGTTTCTTTCGTTTCACATCTCTATGCCTCTCTTCAAAATGCTGGAATCATTGTTTTCAAGGATGATGAGTCACTTCCAAGGGGAGATCACATCTCATACTCTCTGTTGCAAGCAATTGAACAGTCTCGAGTTTTTGTTGTTGTCTTCTCTAGGAACTATGCAGAGTCACAATGGTGTCTGAATGAGTTAGTGAGCATAATGCAGCGTCACAGAACCACAGGGCATGTGGTACTTCCAGTGTTCTATGGTGTTGATCCTTCTGAGGTTCGACATCAAACAGGCGAGTTTGGTAAAGCTTTTCAAAGCCTTTCGAACAGAACTTTTACAGAGGAAAGTGAGAAGCAGCGTTGGATGGAGACACTTCGTGAAGCTGCCAGCATCTCAGGGATTGTAGTCCTAAATTCCAGAAATGAGAGTGAGGCTATCAAAAGCATTATTGAAAATGTTACACGTTTGTTAGACAAGACAGAGCTGTTCATTGCTGATAATCCAGTGGGAGTAGAATCTCGGGTGCAAGACACGATTCAGCTGCTGGATCTGAAAAGATCAAACGATGTTCTACTGCTAGGAATGTGGGGAATGGGAGGCATTGGTAAAACAACCATTGCAAAAGCCATTTATAACAAGATTGGTCGTAATTTTGAGGGAAGGAGCTTCCTTGCACAAATTAGGGAAGTTTGGGGGAAAGACGGTGGCCAGGTCTGCTTGCAAGAACAAGTTTTGTTTGATATCAACAAAGAAACAAAAACAAAGATACACAACGTTGAATTTGGAAAAAATATATTAATGCAAAGGCTTCGCCATAAAAGGGTACTTCTTATACTTGATGATGTGAATAACTTGCACCAATTAAATACTCTGTGTGGAAATCGTGAATGGTTTGGTTCAGGAAGTAGAATCATCATCACAACCAGAGATATGCATATACTTAGAGGGAGTAGAGTTGACAAATTATACATGATGGAAAGGATGGATGAAAGCGAATCTGTTGAGCTCTTTAGTTGGCATGCATTCAAGCAAGCAACTCTTGAGGTCCTTGGGTCCTATTTGTTTGATATGAAGGTAACAGAGTGGAAGAGTGTACTGGAGAAACTCCAGAAAATTCCAAATGACGAAGTGCAGGAGAAGTTAAAAATAAGCTATGATGGTCTAAGTGATAATACTGAGAAAGAAATATTTCTTGATATAGCTTGCTTCTTTATTGGAATGGACCGAAATGATGCCATACATATATTAAATGGCTGTGGACTTTGTGCAGAAAATGGAATACGTGTCCTAATAGAGCGAAGCCTTGTGACTGTAGATCATAACACGCTTGGTATGCATGATTTGTTACGAGACATGGGAAGAGAAATCATTCGTGGAAAATCACCAAAGGAACCTGAAGAACGTAGCAGATTATGGTTTCATGAGGACGTGCTTGATGTACTATCAAAAGAAACTGGAACAAAAGCTATTGAGGGATTGGCTTTGAAGTTACCAAGAACTAGCACAAAATGTTTGAATACTAAAGCTTTTAAGAAGATGAAGAAACTTAGGTTACTGCAACTTGCTGGTGTAGATCTTATTGGGGATTACAAATATCTTTCCAAAGATCTGAGATGGCTTTGTTGGCGTGAATTTCCTTTAACATCCTTTCCAGCAAACTTCTATACAAGAAGTCTTGTTTCTGTTGAGTTAGAACACAGTAATGTTACACATGTCTGGAAAGAAGCCCAGGTGATGGAGAATCTGAAAATTCTCAATCTAAGTCATTCTCACAGTTTAACTCATAGTCCAGACTTTTCCAATATGCCTAATCTCGAAAAGCTAGTTCTCGTAGGTTGTCCAAGGTTGTCAAATGTTTCCCCAACCATTGGACATCTCGATAAAGTTCTTCAAATAAATTTGCAAGATTGTATCAGTCTTCGTAACCTTCCAAGAAGTATCTATAAGTTGAAATCTCTTAAAACACTCATTCTTTCAGGCTGTCTAATGATTGATAAGTTGGAAGAGGACATAGAACAGATGGAGTCTTTGACAACCCTTGTTGCTGATAAGACTGCAATCACAAAAATTCCTTTTTCTATTGTAAGATCAAAAAGCATTGCGTATATTTCTTTGTGTGGCTATGAAGGGTTCTTACGAGATGTGCTTCCATCTATCATCTGGTCTTGGATGTCTCCAACGAATAGTCTTTCATCCCATATGCAAAGATTTGCGGGCATTTCATCTCTTGCTTCTTTAGATGTGCCAAATAACAGTTCCCATCATCTAGCATCTATTTCCAAGGACCTTCCAAAACTTCAAAGTCTTTGGGTAGAGTGTGGCTCTAAACTTCAATTATCTCAAGATACGAAAATTATTTTAGATGCTTTACATGATACAAATTCAGGGGAATCAGAAACAACTGCAACTACATCACAAATGTCAAATATCAATGCTTTTACATTAATTGAATGCAACAGTCAAGTTCACCTATCAGGATCAAATAGATCTCTTTTAATTCAAATGGGAATGAGTTCTAAGGTCTCCTACAATCTAAAAGAGAGCATTTTACAGGTGGTTATTGAAGTGTATAATATTATGTCAGTATAA 2799 0.3855 MRKQRHLEGLVATVAQLKNENQRIIQSINIANQRMKNSEIDNSVLRAEMTKLSSRLWSLRFYDVFLSFRGEDTPVSFVSHLYASLQNAGIIVFKDDESLPRGDHISYSLLQAIEQSRVFVVVFSRNYAESQWCLNELVSIMQRHRTTGHVVLPVFYGVDPSEVRHQTGEFGKAFQSLSNRTFTEESEKQRWMETLREAASISGIVVLNSRNESEAIKSIIENVTRLLDKTELFIADNPVGVESRVQDTIQLLDLKRSNDVLLLGMWGMGGIGKTTIAKAIYNKIGRNFEGRSFLAQIREVWGKDGGQVCLQEQVLFDINKETKTKIHNVEFGKNILMQRLRHKRVLLILDDVNNLHQLNTLCGNREWFGSGSRIIITTRDMHILRGSRVDKLYMMERMDESESVELFSWHAFKQATLEVLGSYLFDMKVTEWKSVLEKLQKIPNDEVQEKLKISYDGLSDNTEKEIFLDIACFFIGMDRNDAIHILNGCGLCAENGIRVLIERSLVTVDHNTLGMHDLLRDMGREIIRGKSPKEPEERSRLWFHEDVLDVLSKETGTKAIEGLALKLPRTSTKCLNTKAFKKMKKLRLLQLAGVDLIGDYKYLSKDLRWLCWREFPLTSFPANFYTRSLVSVELEHSNVTHVWKEAQVMENLKILNLSHSHSLTHSPDFSNMPNLEKLVLVGCPRLSNVSPTIGHLDKVLQINLQDCISLRNLPRSIYKLKSLKTLILSGCLMIDKLEEDIEQMESLTTLVADKTAITKIPFSIVRSKSIAYISLCGYEGFLRDVLPSIIWSWMSPTNSLSSHMQRFAGISSLASLDVPNNSSHHLASISKDLPKLQSLWVECGSKLQLSQDTKIILDALHDTNSGESETTATTSQMSNINAFTLIECNSQVHLSGSNRSLLIQMGMSSKVSYNLKESILQVVIEVYNIMSV 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4592g00001 932 Pfam NB-ARC domain 243 415 IPR002182 GO:0043531
Vium4592g00001 932 SUPERFAMILY Toll/Interleukin receptor TIR domain 53 203 IPR035897 -
Vium4592g00001 932 ProSiteProfiles TIR domain profile. 60 227 IPR000157 GO:0007165
Vium4592g00001 932 SMART till_3 61 201 IPR000157 GO:0007165
Vium4592g00001 932 SUPERFAMILY L domain-like 515 843 - -
Vium4592g00001 932 Coils Coil 7 34 - -
Vium4592g00001 932 SMART AAA_5 259 399 IPR003593 GO:0016887
Vium4592g00001 932 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 226 470 IPR027417 -
Vium4592g00001 932 CDD bZIP_plant_GBF1 1 34 IPR045314 GO:0003700|GO:0006355
Vium4592g00001 932 Gene3D - 225 391 IPR027417 -
Vium4592g00001 932 Gene3D - 60 224 IPR035897 -
Vium4592g00001 932 FunFam Disease resistance protein (TIR-NBS-LRR class) 58 229 - -
Vium4592g00001 932 PRINTS Disease resistance protein signature 647 663 - -
Vium4592g00001 932 PRINTS Disease resistance protein signature 339 353 - -
Vium4592g00001 932 PRINTS Disease resistance protein signature 262 277 - -
Vium4592g00001 932 Gene3D Ribonuclease Inhibitor 564 735 IPR032675 -
Vium4592g00001 932 Gene3D Ribonuclease Inhibitor 736 904 IPR032675 -
Vium4592g00001 932 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 62 869 IPR044974 GO:0006952
Vium4592g00001 932 Gene3D - 415 459 IPR042197 -
Vium4592g00001 932 Pfam TIR domain 62 224 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4592g00001 Vium-Chr4592 8609 15462 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4592g00001 55 764 WRKY Transcription Factor Family AT4G12020 31.325 1.43e-87 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4592g00001 - - vum:124838437 1826.22