Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4590g00001 ATGGAGCCTTACATCGTCTCATGCTCTTTGTCATTTCTCCTCTTGTGCCTTTGGCAGAAAGGTGGTGCTGAGTTCCATCGGGACCTTATTCTTATGTTCGTCGCCACTGCGGCTGCCATTGTCAACGAGAAGACAAACGGCTCTGAGACTCTCCTAGGTTGTGCTGCCACTACTGGTCTTGCTGTTATGATCCTCATCTTTGCCATAGGCCACATCTCCGGTGCTCACTTCAATCCTGCTGTCACCCTTTCCTTTGCTACATTGAAACACTTCCCTGGAAACATGTGTGTGCCTATGTATATTGGTGCACAAATTTTGGCATCGATTTGTGCCGCATTTGCTCTGAAATGGGTTTATCACCCTTTCATGAGTGGTGGAGTCACAGTTCCTTCAGGAGGATACGTCTCATCTTTTGCTTTGGAATTCATTATTGCCTTTAATTTAATGTTCGTTGTCACTGCAGTAACCACCAACACCAGAGCTGTGGGAGAACTTGCAGGAATCGCGGTGGGAGGCACCGTGATGCTCAATATAATGATAGCAGGACCAGTATCAGGAGCCTCAATGAATCCAGTAAGAACATTAGGTCCTGCAATAGCCGCAAAGAACTACAAAGCAATATGGATTTATTTGGTAGCTTCCGTGTTTGGAGCTTTAGCCGGTGCATGTACCTACACTGTAGTGAAGCTGTCCAAAGAAGATGATGCCAAAGAAAAAACTTCAATCAGTTTCAGAGAGTGA 741 0.4575 MEPYIVSCSLSFLLLCLWQKGGAEFHRDLILMFVATAAAIVNEKTNGSETLLGCAATTGLAVMILIFAIGHISGAHFNPAVTLSFATLKHFPGNMCVPMYIGAQILASICAAFALKWVYHPFMSGGVTVPSGGYVSSFALEFIIAFNLMFVVTAVTTNTRAVGELAGIAVGGTVMLNIMIAGPVSGASMNPVRTLGPAIAAKNYKAIWIYLVASVFGALAGACTYTVVKLSKEDDAKEKTSISFRE 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4590g00001 246 PANTHER AQUAPORIN NIP2-1 15 234 IPR034294 -
Vium4590g00001 246 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium4590g00001 246 PRINTS Major intrinsic protein family signature 96 115 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium4590g00001 246 PRINTS Major intrinsic protein family signature 58 82 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium4590g00001 246 PRINTS Major intrinsic protein family signature 140 158 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium4590g00001 246 PRINTS Major intrinsic protein family signature 171 193 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium4590g00001 246 PRINTS Major intrinsic protein family signature 208 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium4590g00001 246 SUPERFAMILY Aquaporin-like 14 233 IPR023271 -
Vium4590g00001 246 Gene3D Glycerol uptake facilitator protein. 13 242 IPR023271 -
Vium4590g00001 246 Pfam Major intrinsic protein 18 225 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium4590g00001 246 ProSitePatterns MIP family signature. 76 84 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4590g00001 Vium-Chr4590 3853 6646 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4590g00001 6 246 Major Intrinsic Protein MIP AT1G80760 68.050 2.20e-110 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4590g00001 K09874 - gmx:100815637 345.895