Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4588g00001 ATGTTACTTCACTTTGGAAAGCTGCCAGTTCTTGTGGTCTCAACGGCGGAGGCAGCTCGTGAGGTTATGAAAACCCATGACCTTATTTTCTCCAACAGACCACATCGTAAGATGTTTGATATCTTCTTTTACGATTCCAAAGATGTGTCATCTGCTCCATATGGCAACTACTGGAGGCAGATAAGGAGTATTTGTGTCTTGCATCTTCTCAGTGCAAAAAAGGTTCAATCCTTAGGTGCAGTGAGAGAAGAGGAAATCTCCACAACGATGGATAAGATTAAACAGTGTTGCTGTTCTGTGACGCCTGTGAATTTAACTGATTTATTTTCAACAGTCACAAATGACATAGTGAGCAGAGCTGCTCTCGGAAGGAGATACAGTGGAGGAGAAGGGAGTAAGTTTTGGGAGCCAATGAATGAGATGATGAAGATGTTGGGTGATCTAGTTATAGGGGACTGTATACCTTGGCTTGATTGGGTGGGAAGAGTTAATGGAATGTATGGTAGGGCAAAGAGAGTGGCTAAACAGCTTGATGAATTTTTTGATGAAGTTGTTGATGAACATGTAAGCAGAAGAGGGCATGATGTGCATGATGATAATGATGATGATGATGAACAGAATGATTTGGTGGACATTTTGCTGAGGATCCAAAAGACAAACGCCTTGGGGTTCCAGATTGATAAAACAACCATTAAGGCTATAATCCTGGATATGTTTGTGGCAGGTACTGATACCAGCTCCTCAATCCTGGGATGGATAATGACAGAACTCTTGAGGCACCCAAGTGTGATGCAGAAGCTTAAAGATGAGATAAGGAATGTGGTTAGTGATAGAACTCGCATAACTGAGGAAGATTTAAGCAGCATGCCTTATTTGAAAGCAGTGATTAAAGAAAGTTTTCGATTACATCCCACAGATCCAATATTGATACCAAGGGAATCCATGGAAGATGCCAAAGTGATGAAATATGACATTGCAGCAGGAACAAAAATAATAGTGAATGCATGGGCAATAGCAAGAGATCCTTGTTACTGGGAAAATCCTGAAGAGTTTGAAGCAGAAAGATTCTTAAAGAGTTCAATAGATGTGAAAGGACATGATTTTGAAGTGATACCATTTGGAGCAGGAAGAAGGGGTTGTCCAGGAATAATGTTTGCCATGAATGTGATTGAGTTGGTCATAGCAAACCTTGTTCATCAGTTTAATTGGGAAGTGCCAAGTGGAGAAGTGGGGGATCAGACACTCGACATGAGTGAATCTGCAGGGTTGACCAGTCATAGAAAATTTCCTCTCATAGCATTTGCCTCCTACCATGCATAA 1320 0.4121 MLLHFGKLPVLVVSTAEAAREVMKTHDLIFSNRPHRKMFDIFFYDSKDVSSAPYGNYWRQIRSICVLHLLSAKKVQSLGAVREEEISTTMDKIKQCCCSVTPVNLTDLFSTVTNDIVSRAALGRRYSGGEGSKFWEPMNEMMKMLGDLVIGDCIPWLDWVGRVNGMYGRAKRVAKQLDEFFDEVVDEHVSRRGHDVHDDNDDDDEQNDLVDILLRIQKTNALGFQIDKTTIKAIILDMFVAGTDTSSSILGWIMTELLRHPSVMQKLKDEIRNVVSDRTRITEEDLSSMPYLKAVIKESFRLHPTDPILIPRESMEDAKVMKYDIAAGTKIIVNAWAIARDPCYWENPEEFEAERFLKSSIDVKGHDFEVIPFGAGRRGCPGIMFAMNVIELVIANLVHQFNWEVPSGEVGDQTLDMSESAGLTSHRKFPLIAFASYHA 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4588g00001 439 Coils Coil 264 284 - -
Vium4588g00001 439 Gene3D Cytochrome P450 1 432 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4588g00001 439 PRINTS P450 superfamily signature 371 380 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4588g00001 439 PRINTS P450 superfamily signature 294 305 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4588g00001 439 PRINTS P450 superfamily signature 241 258 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4588g00001 439 CDD CYP71-like 1 431 - -
Vium4588g00001 439 SUPERFAMILY Cytochrome P450 2 433 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4588g00001 439 PRINTS E-class P450 group I signature 370 380 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4588g00001 439 PRINTS E-class P450 group I signature 230 247 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4588g00001 439 PRINTS E-class P450 group I signature 250 276 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4588g00001 439 PRINTS E-class P450 group I signature 112 130 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4588g00001 439 PRINTS E-class P450 group I signature 293 311 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4588g00001 439 PRINTS E-class P450 group I signature 18 39 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4588g00001 439 PRINTS E-class P450 group I signature 334 358 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4588g00001 439 PRINTS E-class P450 group I signature 380 403 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4588g00001 439 PANTHER CYTOCHROME P450 71B11-RELATED 1 435 - -
Vium4588g00001 439 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 373 382 IPR017972 GO:0005506|GO:0016705
Vium4588g00001 439 Pfam Cytochrome P450 3 413 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium4588g00001 439 FunFam Cytochrome P450 83B1 1 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4588g00001 Vium-Chr4588 8 1782 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4588g00001 1 436 Cytochrome P450 AT3G48310 47.140 3.52e-153 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4588g00001 - - vum:124838435 864.374