Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4579g00004 ATGGCCCGAAGAAATTCGACTCCAGGGTTTCGGTTCCGTCCCACCGACGTTGAGTTGATTGAGTTTTTTCTAAAGAGGAAGGTTCGGGGCAAGAAAATTCCTATCGGAGTAATAGCTGAGCTTGACTTGTACAAGTATGCTCCGTGGGATCTTCCAGATAAATCTGTGCTTCAGAGTGGGGATTTGGAGTGGTACTTCTTTTGCCCGCAGGGGAAGAAGTATTTGAGTGGAGGGAGGTTGAATCGGTCGACGGAGGCTGGGTACTGGAAGACTACTGGGAAGGATAGAGCGGTTGAGCACAAGAATCGAGTTGTGGGGATGATTAAAACTCTGGTTTTTCACACCGGTAAGGCCCCTAAGGGAAATCGGACTGATTGGGTTATGCATGAATTCAGACTCCAGGACAAGGAGATGGTTGACGACGGCATTTCGCAGGATTCCTATGTAATTTGTAGGATATTCCAAAAGGAAGGTCCTGGCCCTAGGAATGGTGCACAATATGGTAAACCATATGATGAAAAAGACTGGGATACAGATGAGGAAATTGACTCTGTGCAATCTGACCGTGTTGCTTCTGTGTCTACACCTGTTCCCATACAACCCAGTGGAAGTCATATTTCTATTGCAAAAGACATCCATCCCTCTACAAGTGGATGTGCTGGATTGACCTCTGAATTATGTGTATCAAAATTGATGCCTTCTTGCTCAGCACAGCATGCGATTCCCACCAATCAAGTTGTCTCTGTATCATGTGTATCGGAATTGATGCCCTCCTGCTCAGTACTATCTTCTCCTAACTGTGCGTTGGGTTCTGTATCACATCTATCAGCAGTTCCTTTTGCTCCAAACTATGATGTTGACTCTGTATCATGTGTATCAAAATTGATGTCCTCTTGCTTGCCAGTTGCTTCGGCTCCAAATAATTTAGTTGACGTTTCATCATCTGTACCAGAATTGATGCCCTCTTGCACGTCACGTCCTTCACCTTCATCTCCAAACCATCAAGATGATGATAACATTTTATCTTTGCTAGATTATTTGAAAGAAGATGATGACACAATGGCTGTGAATGAAAACAATGGAATTGAGAAGGTTGATCCTGATCGGGAGAACAATGCTGAATGCGCACCATGTTCGGATCAAAATGTGATTTTTGAGAACTTAGGAGACCTTGACAGCTTGGTTGGATTGGGTGAAGGAAGTTTATCCTCTGGACAGAAAATTGGACTTTCTACAAGCGATATGTTTTATATAGGTGGTGATGATATGTTCAGGTCTTGGGAATCCCAAGACTTTTTGGAGTTGATGGACCTAGCGGGGCCACAATAA 1329 0.4402 MARRNSTPGFRFRPTDVELIEFFLKRKVRGKKIPIGVIAELDLYKYAPWDLPDKSVLQSGDLEWYFFCPQGKKYLSGGRLNRSTEAGYWKTTGKDRAVEHKNRVVGMIKTLVFHTGKAPKGNRTDWVMHEFRLQDKEMVDDGISQDSYVICRIFQKEGPGPRNGAQYGKPYDEKDWDTDEEIDSVQSDRVASVSTPVPIQPSGSHISIAKDIHPSTSGCAGLTSELCVSKLMPSCSAQHAIPTNQVVSVSCVSELMPSCSVLSSPNCALGSVSHLSAVPFAPNYDVDSVSCVSKLMSSCLPVASAPNNLVDVSSSVPELMPSCTSRPSPSSPNHQDDDNILSLLDYLKEDDDTMAVNENNGIEKVDPDRENNAECAPCSDQNVIFENLGDLDSLVGLGEGSLSSGQKIGLSTSDMFYIGGDDMFRSWESQDFLELMDLAGPQ 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4579g00004 442 Gene3D NAC domain 15 158 IPR036093 GO:0003677|GO:0006355
Vium4579g00004 442 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Vium4579g00004 442 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Vium4579g00004 442 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 245 - -
Vium4579g00004 442 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
Vium4579g00004 442 FunFam Nac domain-containing protein 86 15 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4579g00004 Vium-Chr4579 24845 40185 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4579g00004 1 269 NAC Transcription Factor Family AT5G64060 47.955 3.77e-86 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium4579g00004 NAM 2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4579g00004 - - vun:114164401 741.88