Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4577g00012 ATGGAAAGCATATGGGGCCCATATGGATTGTGGCTCAGAATTTATGTTGGATTGATTTCTCTATGGGGAACTCAACATTGTTTGTCTCTAAACGATGAAGGATTATCCTTGTTGGAATTTCGGGGAAGAATAACTTGTGATCCTTTTCATGCTCTGTCAAATTGGAACCCAAATGATTGTAATCCTTGCCAGTGGTATGGTGTTCGTTGTGTAGGTGGTAAAGTGCGAATGCTGGTCCTACCTGAACTATATTTGGAAGGCACATTGGCTCCTGAGCTTGGGAAACTTAGTCATCTAAAATCCCTTATATTATACAAGAACAGTTTTTCTGGTACTATTCCCGAAGAACTTGGTGATCTAGACAAGCTGGAGTTATTGGATTTAAGGGGGAATAACATGACTGGATGTGTCCCAGCAGAAATTGGCCATTTGTTGTTGTCAGAACAATTGTTCATTTGTGACAAGAAATGTGAAAGCAGTGATTCTCAAGGGATTGGAAAGCTCAGATTGCCCTGTAGTATCAATCTTTCAACTCGTTTGACAACTTCATCACTTGGAAAGAACCGAAAGGTTGCACCCAGGCTCAAGCTAGTAAAGGCCACCCCTCATGCCCATGCAGAGAAATGGTGTGGCATTCTGACTGGCTCTGATGATTCAGAGATTGACCAGAATGTAGAAAATGTAGTCAATTCAGCACGACGGAAGTTGCTTGATCAGTCTAGTAACCTTGCAGCTGCACCTTTCAGTGGTGGGCCTACTATACAGATCAGTTATATTCCAATTACCCAGAGCAGTGGAGCTTTTCCAGCCTTCCCAGACACCAATAAGCAACAGAATCAGTCACCTGGACAATTGCCTTCAACTTCTAATTTGACACCTACGAATCAAACAAGTCAACCAAATTCAGCTAATGTTGCTTCTGGAAAATTATGGGAGTATATTATTATAATAGCAGGTGTAGCTGTCTTGGTCATTATTGTTTTGATCATGCTTTGCATTTGGCGAAAACGAGCAGCAAGAGTAATAAAGCCATGGAAAACAGGAATAAGTGGACAGCTGCAGAAAGCATTTATAACAGGGGTCCCCAAGTTGAATCAGGCAGAGCTGGAGACAGCCTGTGAAGATTTCAGCAATATTATTAATACTTTTGATGAATGCACCATATATAAGGGAACACTATCCAGTGGAGTCGAGATTGCTGTTGATTCAACTATTGTTACTTCGGCCCGTGATTGGTCAAAGACAATGGAGACGGCCTATCGCAAAAAGATTGCCACATTATCCCGTGTTAACCATAAGAACTTTACCAATCTTATTGGGTACTGTGATGAAGAAGAACCATTCACCAGGATGATGGTATTTGAGTATGCTCCGAATGGAAGCTTATTTGAGCATCTGCATGTTAAGGAAGTTGAACCTCTTGACTGGAGCGCAAGAATGAGGGTTATTATGGGCACATCATATTGTCTTCAGTATATGCACCATGATCTGAATCCACCAGTAGCTCATTCCAACCTCAATTCCGTTGCTATATTGTTGACAGATGACTTTGCTGCTAAGATATCAGAAATAGCTTTTGGCAAGAATGTGTCATCACAAGCCAACACACCTGGACATGAGTCACAGAAATGTGACTTGCCACCCCATGCTGATCCTGAAACCGATGTCTACAACTTTGGAGTGTTGTTGCTTGAAATCATTTCCGGAAAACTACCATACTCTGAAGAACATGGCCACATTACTGACTGGGCTGCTGAGCACTTGAATAATAAGCAAAGCGTCAGCAATCTGATTGATCCCTCGTTGGAATCCTTCAAAGAAGAAGAACTTGATGTCATCTGTGAGGTGATCAAAGAATGTCTTCAATCTGATGCAAGGCTAAGACCAACGATGAAGGACATAGCTCCCAGATTGAGGGAAGTGCTGCATGTATCACCTGAGCAAGCTGTCCCTAGACTCTCTCCCCTCTGGTGGGCTGAACTGGAGATCTTATCATTGGAGACCTCTTAA 2010 0.4234 MESIWGPYGLWLRIYVGLISLWGTQHCLSLNDEGLSLLEFRGRITCDPFHALSNWNPNDCNPCQWYGVRCVGGKVRMLVLPELYLEGTLAPELGKLSHLKSLILYKNSFSGTIPEELGDLDKLELLDLRGNNMTGCVPAEIGHLLLSEQLFICDKKCESSDSQGIGKLRLPCSINLSTRLTTSSLGKNRKVAPRLKLVKATPHAHAEKWCGILTGSDDSEIDQNVENVVNSARRKLLDQSSNLAAAPFSGGPTIQISYIPITQSSGAFPAFPDTNKQQNQSPGQLPSTSNLTPTNQTSQPNSANVASGKLWEYIIIIAGVAVLVIIVLIMLCIWRKRAARVIKPWKTGISGQLQKAFITGVPKLNQAELETACEDFSNIINTFDECTIYKGTLSSGVEIAVDSTIVTSARDWSKTMETAYRKKIATLSRVNHKNFTNLIGYCDEEEPFTRMMVFEYAPNGSLFEHLHVKEVEPLDWSARMRVIMGTSYCLQYMHHDLNPPVAHSNLNSVAILLTDDFAAKISEIAFGKNVSSQANTPGHESQKCDLPPHADPETDVYNFGVLLLEIISGKLPYSEEHGHITDWAAEHLNNKQSVSNLIDPSLESFKEEELDVICEVIKECLQSDARLRPTMKDIAPRLREVLHVSPEQAVPRLSPLWWAELEILSLETS 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4577g00012 669 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Vium4577g00012 669 SUPERFAMILY L domain-like 31 169 - -
Vium4577g00012 669 Gene3D Ribonuclease Inhibitor 30 211 IPR032675 -
Vium4577g00012 669 MobiDBLite consensus disorder prediction 269 302 - -
Vium4577g00012 669 Gene3D Phosphorylase Kinase; domain 1 346 456 - -
Vium4577g00012 669 Pfam Protein tyrosine and serine/threonine kinase 388 637 IPR001245 GO:0004672|GO:0006468
Vium4577g00012 669 FunFam Inactive receptor-like serine/threonine-protein kinase 348 456 - -
Vium4577g00012 669 Gene3D Transferase(Phosphotransferase) domain 1 457 650 - -
Vium4577g00012 669 ProSiteProfiles Protein kinase domain profile. 339 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4577g00012 669 FunFam Leucine-rich repeat receptor-like kinase 35 151 - -
Vium4577g00012 669 SUPERFAMILY Protein kinase-like (PK-like) 367 638 IPR011009 -
Vium4577g00012 669 PANTHER PROTEIN MALE DISCOVERER 2 18 666 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4577g00012 Vium-Chr4577 93105 99363 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4577g00012 78 641 Receptor kinase-like Gene Family AT5G56040 25.156 1.35e-45 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vium4577g00012 PK_Tyr_Ser-Thr 4.4e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4577g00012 - - gmx:100808098 1051.2