Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4577g00011 ATGGAAAGCATATGGGGCCCATATGGATTGTGGCTCAGAATTTATGTTGGATTGATTTCTCTATGGGGAACTCAACATTGTTTGTCTCTAAACGATGAAGGATTATCCTTGTTGGAATTTCGGGGAAGAATAACTTGTGATCCTTTTCATGCTCTGTCAAATTGGAACCCAAATGATTGTAATCCTTGCCAGTGGTATGGTGTTCGTTGTGTAGGTGGTAAAGTGCGAATGCTGGTCCTACCTGAACTATATTTGGAAGGCACATTGGCTCCTGAGCTTGGGAAACTTAGTCATCTAAAATCCCTTATATTATACAAGAACAGTTTTTCTGGTACTATTCCCGAAGAACTTGGTGATCTAGACAAGCTGGAGTTATTGGATTTAAGGGGGAATAACATGACTGGATGTGTCCCAGCAGAAATTGGCCATTTGTTGTTGTCAGAACAATTGTTCATTTGTGACAAGAAATGTGAAAGCAGTGATTCTCAAGGGATTGGAAAGCTCAGATTGCCCTGTAGTATCAATCTTTCAACTCGTTTGACAACTTCATCACTTGGAAAGAACCGAAAGGTTGCACCCAGAAATTATAAGCAATGGAATGGGGCAGATTCATCTTTTATTCCACTTAAAGGAGCACTAAAAAAATACGCCAATGCTGTCCTTGCTATGGCACTTCCACTGCTCAAGCTAGTAAAGGCCACCCCTCATGCCCATGCAGAGAAATGGTGTGGCATTCTGACTGGCTCTGATGATTCAGAGATTGACCAGAATGTAGAAAATGTAGTCAATTCAGCACGACGGAAGTTGCTTGATCAGTCTAGTAACCTTGCAGCTGCACCTTTCAGTGGTGGGCCTACTATACAGATCAGTTATATTCCAATTACCCAGAGCAGTGGAGCTTTTCCAGCCTTCCCAGACACCAATAAGCAACAGAATCAGTCACCTGGACAATTGCCTTCAACTTCTAATTTGACACCTACGAATCAAACAAGTCAACCAAATTCAGCTAATGTTGCTTCTGGAAAATTATGGGAGTATATTATTATAATAGCAGGTGTAGCTGTCTTGGTCATTATTGTTTTGATCATGCTTTGCATTTGGCGAAAACGAGCAGCAAGAGTAATAAAGCCATGGAAAACAGGAATAAGTGGACAGCTGCAGAAAGCATTTATAACAGGGGTCCCCAAGTTGAATCAGGCAGAGCTGGAGACAGCCTGTGAAGATTTCAGCAATATTATTAATACTTTTGATGAATGCACCATATATAAGGGAACACTATCCAGTGGAGTCGAGATTGCTGTTGATTCAACTATTGTTACTTCGGCCCGTGATTGGTCAAAGACAATGGAGACGGCCTATCGCAAAAAGATTGCCACATTATCCCGTGTTAACCATAAGAACTTTACCAATCTTATTGGGTACTGTGATGAAGAAGAACCATTCACCAGGATGATGGTATTTGAGTATGCTCCGAATGGAAGCTTATTTGAGCATCTGCATGTTAAGGAAGTTGAACCTCTTGACTGGAGCGCAAGAATGAGGGTTATTATGGGCACATCATATTGTCTTCAGTATATGCACCATGATCTGAATCCACCAGTAGCTCATTCCAACCTCAATTCCGTTGCTATATTGTTGACAGATGACTTTGCTGCTAAGATATCAGAAATAGCTTTTGGCAAGAATGTGTCATCACAAGCCAACACACCTGGACATGAGTCACAGAAATGTGACTTGCCACCCCATGCTGATCCTGAAACCGATGTCTACAACTTTGGAGTGTTGTTGCTTGAAATCATTTCCGGAAAACTACCATACTCTGAAGAACATGGCCACATTACTGACTGGGCTGCTGAGCACTTGAATAATAAGCAAAGCGTCAGCAATCTGATTGATCCCTCGTTGGAATCCTTCAAAGAAGAAGAACTTGATGTCATCTGTGAGGTGATCAAAGAATGTCTTCAATCTGATGCAAGGCTAAGACCAACGATGAAGGACATAGCTCCCAGATTGAGGGAAGTGCTGCATGTATCACCTGAGCAAGCTGTCCCTAGACTCTCTCCCCTCTGGTGGGCTGAACTGGAGATCTTATCATTGGAGACCTCTTAA 2109 0.4215 MESIWGPYGLWLRIYVGLISLWGTQHCLSLNDEGLSLLEFRGRITCDPFHALSNWNPNDCNPCQWYGVRCVGGKVRMLVLPELYLEGTLAPELGKLSHLKSLILYKNSFSGTIPEELGDLDKLELLDLRGNNMTGCVPAEIGHLLLSEQLFICDKKCESSDSQGIGKLRLPCSINLSTRLTTSSLGKNRKVAPRNYKQWNGADSSFIPLKGALKKYANAVLAMALPLLKLVKATPHAHAEKWCGILTGSDDSEIDQNVENVVNSARRKLLDQSSNLAAAPFSGGPTIQISYIPITQSSGAFPAFPDTNKQQNQSPGQLPSTSNLTPTNQTSQPNSANVASGKLWEYIIIIAGVAVLVIIVLIMLCIWRKRAARVIKPWKTGISGQLQKAFITGVPKLNQAELETACEDFSNIINTFDECTIYKGTLSSGVEIAVDSTIVTSARDWSKTMETAYRKKIATLSRVNHKNFTNLIGYCDEEEPFTRMMVFEYAPNGSLFEHLHVKEVEPLDWSARMRVIMGTSYCLQYMHHDLNPPVAHSNLNSVAILLTDDFAAKISEIAFGKNVSSQANTPGHESQKCDLPPHADPETDVYNFGVLLLEIISGKLPYSEEHGHITDWAAEHLNNKQSVSNLIDPSLESFKEEELDVICEVIKECLQSDARLRPTMKDIAPRLREVLHVSPEQAVPRLSPLWWAELEILSLETS 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4577g00011 702 FunFam Inactive receptor-like serine/threonine-protein kinase 381 489 - -
Vium4577g00011 702 PANTHER PROTEIN MALE DISCOVERER 2 18 699 - -
Vium4577g00011 702 SUPERFAMILY L domain-like 31 169 - -
Vium4577g00011 702 ProSiteProfiles Protein kinase domain profile. 372 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4577g00011 702 Gene3D Transferase(Phosphotransferase) domain 1 490 683 - -
Vium4577g00011 702 Gene3D Phosphorylase Kinase; domain 1 379 489 - -
Vium4577g00011 702 Pfam Protein tyrosine and serine/threonine kinase 421 670 IPR001245 GO:0004672|GO:0006468
Vium4577g00011 702 MobiDBLite consensus disorder prediction 303 335 - -
Vium4577g00011 702 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Vium4577g00011 702 Gene3D Ribonuclease Inhibitor 30 202 IPR032675 -
Vium4577g00011 702 SUPERFAMILY Protein kinase-like (PK-like) 400 671 IPR011009 -
Vium4577g00011 702 FunFam Leucine-rich repeat receptor-like kinase 35 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4577g00011 Vium-Chr4577 93105 99363 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4577g00011 78 674 Receptor kinase-like Gene Family AT5G56040 26.205 4.58e-46 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vium4577g00011 PK_Tyr_Ser-Thr 4.9e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4577g00011 - - gmx:100808098 1108.59