Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4577g00007 ATGAAGCCCCTTTGCAGATTCTTGATTTTCCTATCGCTATTTGCTCTGGTGGAATCTTCATGCAGCAGTGAAGAGCACGTTTTGGTGTCAAAGGCTTTCAAATCAGTCTCTGGCTTCAACGCTTACTCCTGGTTTCAAACCAACTGTTCAGAAGCTCACATCACCAGAATAGTACTTCCATCACAAAATCTCACTGGTACAATCTCCTGGGGTTACCTCAGGAACATGTCCAACCTGCAGGTTTTCGATCTCTCAAGAAATTCTTTACAGGGCCACGTCCCAAGCTGGTTTTGGTCAACTTCATCCTTATTGGAAATAAACCTCTCCGGTAACAGGTTCGGAGGGAGCATTATTTTCCACTCCTCCAAACCCACAACACAAAACACCTCGTTTTCAATTTCATCCATTCGAACGCTCAATCTCTCCCACAACAGGTTTACCAATTCAATCCAACTTTCTGCCTTCCAGAACCTTAAAATCCTCGACCTTTCTAACAACAACCTGCGAACACTCCCCTCCGGACTCCAAAACCTCTCCAAACTTCAACACCTCGATCTCTCATGCTGTAATCTCCAAAGCGACGTAAAACCAGTTTCCTCTCTTCACTCACTTCGCTACTTGGACTTGTCGAACAACACCTTCACGGGAAATTTCCCTTTTGATTTCCCTCAACTGGCCACCCTCGAATTCCTCAACATCTCCTATAACAACTTCACCTCATCAACTAGCCTAACCAAGTTCAACAAATTCGGTAAATCAGCTTTTATTCACGCTGGCAACAACTTCACCTACGACAGCACCGCGTCCAAAACGACCAACAGCAGTAAAAACTCAGCGCAATCCACCCCCAAGAAACAACAGAAGCGAAAATCCAAAACGCTGATTGCTGCAGCGTCGTCTGCGGGATCAGCAGTTGTCCTAATTCTGTTGTCCATTTGGGTACTCCGCATTGTTATTAGGAAGAGGAAGCAACGCGCCAAGAGGAGCAAGTGGGCGATTTCCATGCCGGTTCCACATGGTATGAACGAGGTGACAAGCAGAGTGGAGAAATCAGGGCCGTTCGCTTTCGAGACTGAATCGGGGTCAACGTGGGTGGCTGACCTGAAGGAACCGTCTTCTGCGGCGGTGGTGATGTTCGAGAAGCCGTTGATGAACCTTACTTTCAAGGACCTCATTGTTGCCACGTCACACTTCGGGAAAGACTCGCTGCTGGCGGAGGGAAGGTGTGGGCCCGTTTACAGAGCCGTGCTGCCGGGGGACCTCCACGTGGCAATCAAGGTCCTGGAACACGCTAGAGACGTTGATCCTGATGATTCGGTCGCCACGTTCGTTGACCTCTCAAGACTGAAGCACCCCAACTTGTTGCCACTCTCCGGTTACTGCATTGCCGGCAAAGAGAAACTGGTACTGTACGAGTACATGGCTAACGGCGATCTTGGAAGGTGGCTACACGAGCTTCCAACAGGGGACACCAATGTAGAGGATTGGACAGGCGACACGTGGGAAATTCAAAACGGCGCCGTCGACGACGGGTCCCCTGAAAAGATGGGGTGGCTGACACGACATCGGATTGCGGTTGGGATAGCGCGTGGTCTCGCGTACCTGCACCACGCGCGTTCGAAGCCCGTCGTACACGGCCACTTCGTCACCTCGAACATTTTACTCGCAGACGATTTCGAGCCCCGGATCTCCGATTTTGGATTGCGACACGGCCGGAACTCGAACGGAGGCACGGAGGCAGACGTGTACTGCTTCGGGGCGGCGCTAATGGAACTCCTGACGGGGAAAGAAAGCACGGCGGAGAAGGTGGCAGCAGCGAGGAAGGCGGTTAGGGAGGGGCAGGGCGTTAGGGTTCTGGACGAGAGGCTCCTACTCGGTGGTGACTCGGTGGTGAGTGAGATGGTGGAGACTCTCCGAGTGGCGTTTTTGTGTACGGCGGAAGACTCTTGGAAGAGGCCCACAATGCAGCAGGTATTGGGTTTGCTGAAAGACATTCGTCCTCATCAACAGCAACTCGTGACGAGTTGA 2028 0.5163 MKPLCRFLIFLSLFALVESSCSSEEHVLVSKAFKSVSGFNAYSWFQTNCSEAHITRIVLPSQNLTGTISWGYLRNMSNLQVFDLSRNSLQGHVPSWFWSTSSLLEINLSGNRFGGSIIFHSSKPTTQNTSFSISSIRTLNLSHNRFTNSIQLSAFQNLKILDLSNNNLRTLPSGLQNLSKLQHLDLSCCNLQSDVKPVSSLHSLRYLDLSNNTFTGNFPFDFPQLATLEFLNISYNNFTSSTSLTKFNKFGKSAFIHAGNNFTYDSTASKTTNSSKNSAQSTPKKQQKRKSKTLIAAASSAGSAVVLILLSIWVLRIVIRKRKQRAKRSKWAISMPVPHGMNEVTSRVEKSGPFAFETESGSTWVADLKEPSSAAVVMFEKPLMNLTFKDLIVATSHFGKDSLLAEGRCGPVYRAVLPGDLHVAIKVLEHARDVDPDDSVATFVDLSRLKHPNLLPLSGYCIAGKEKLVLYEYMANGDLGRWLHELPTGDTNVEDWTGDTWEIQNGAVDDGSPEKMGWLTRHRIAVGIARGLAYLHHARSKPVVHGHFVTSNILLADDFEPRISDFGLRHGRNSNGGTEADVYCFGAALMELLTGKESTAEKVAAARKAVREGQGVRVLDERLLLGGDSVVSEMVETLRVAFLCTAEDSWKRPTMQQVLGLLKDIRPHQQQLVTS 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4577g00007 675 Pfam Leucine rich repeat 135 191 IPR001611 GO:0005515
Vium4577g00007 675 Pfam Leucine rich repeat 54 113 IPR001611 GO:0005515
Vium4577g00007 675 PRINTS Leucine-rich repeat signature 201 214 - -
Vium4577g00007 675 PRINTS Leucine-rich repeat signature 158 171 - -
Vium4577g00007 675 ProSiteProfiles Protein kinase domain profile. 398 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4577g00007 675 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 49 666 - -
Vium4577g00007 675 Gene3D Transferase(Phosphotransferase) domain 1 575 674 - -
Vium4577g00007 675 FunFam Putative LRR receptor-like serine/threonine-protein kinase 359 473 - -
Vium4577g00007 675 SUPERFAMILY L domain-like 41 241 - -
Vium4577g00007 675 SUPERFAMILY Protein kinase-like (PK-like) 376 666 IPR011009 -
Vium4577g00007 675 ProSiteProfiles Leucine-rich repeat profile. 157 179 IPR001611 GO:0005515
Vium4577g00007 675 Gene3D Ribonuclease Inhibitor 125 301 IPR032675 -
Vium4577g00007 675 Pfam Protein tyrosine and serine/threonine kinase 402 570 IPR001245 GO:0004672|GO:0006468
Vium4577g00007 675 Gene3D Ribonuclease Inhibitor 15 124 IPR032675 -
Vium4577g00007 675 SMART LRR_typ_2 178 202 IPR003591 -
Vium4577g00007 675 SMART LRR_typ_2 76 99 IPR003591 -
Vium4577g00007 675 SMART LRR_typ_2 155 177 IPR003591 -
Vium4577g00007 675 Gene3D Phosphorylase Kinase; domain 1 358 473 - -
Vium4577g00007 675 MobiDBLite consensus disorder prediction 268 290 - -
Vium4577g00007 675 Gene3D Transferase(Phosphotransferase) domain 1 474 574 - -
Vium4577g00007 675 FunFam Calmodulin-binding receptor kinase CaMRLK 134 244 - -
Vium4577g00007 675 MobiDBLite consensus disorder prediction 268 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4577g00007 Vium-Chr4577 46101 49286 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4577g00007 52 665 Receptor kinase-like Gene Family AT5G07280 30.990 1.54e-73 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Vium4577g00007 PK_Tyr_Ser-Thr 5.6e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4577g00007 - - gmx:100788556 1043.49