Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4577g00004 ATGCGCATGATGGACCATCCAAATGTGATCTCTCTGAAGGACCGGTTCTTTTCCACTACAAGTGAAGATGAACTTTTTCTTAATTTGGTGATGGAATATGTTCCTGAGTCTATGCATCGAGTCTCAAAGTTCTATAGTAACACTAATCAGAGCATGCCACTTATCTTTGTAAAACTTTACATGCACCAGATTTTCCGGGGACTGGCTTATATCCACACAGTCCCTGGAGTTTGCCACAGAGATTTGAAGCCTCAAAATATACTGGTTGATCCTCTTACACACCAGGTTAAGATATGTGATTTTGGAAGTGCAAAAGTGCTGGTTAAAGGTGAAGCTAATTTATCACACATATGTTCACTTTTCTATCGGGCACCCGAACTAATCTTTGGTGCCACTGAGTACACAACTTCAATTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAACTGCTTTTGGGCAAGCCATTATTTCCTGGCGACAATGCAGTGGACCAACTTGTAGAGATTATCAAGGTTCTTGGCACACCCTCCCAAGAGGAAGTTTGCAGTTCAAATTCAAGCAACAATGATTTCAAGTTTCCACAGATATTCCACCAAAATATGCCTCCAGAAGCAATTGATCTTACTTCCCGGCTCCTGCAGTATTCCCCAACCCATCGTTGTACTGCGCTAGAAGCATGTGCACACCCATTCTTTGATGAACTCCGTGAACCCAATGCTCAATTGCCAGATGGTCGGCCATTTCCCCCTCTATTCAACTTTAAACAAGAGTTATCCGGAGCTTCCCCAGAGCTTATTGATAAGTTAATACCTGATCATGCGAAGCTACAAAATACCCATTTTGGTGGAACATGA 855 0.4269 MRMMDHPNVISLKDRFFSTTSEDELFLNLVMEYVPESMHRVSKFYSNTNQSMPLIFVKLYMHQIFRGLAYIHTVPGVCHRDLKPQNILVDPLTHQVKICDFGSAKVLVKGEANLSHICSLFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGKPLFPGDNAVDQLVEIIKVLGTPSQEEVCSSNSSNNDFKFPQIFHQNMPPEAIDLTSRLLQYSPTHRCTALEACAHPFFDELREPNAQLPDGRPFPPLFNFKQELSGASPELIDKLIPDHAKLQNTHFGGT 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4577g00004 284 ProSiteProfiles Protein kinase domain profile. 1 232 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4577g00004 284 CDD STKc_GSK3 1 235 IPR039192 -
Vium4577g00004 284 SMART serkin_6 1 232 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4577g00004 284 Pfam Protein kinase domain 1 232 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4577g00004 284 Gene3D Transferase(Phosphotransferase) domain 1 36 275 - -
Vium4577g00004 284 Gene3D Phosphorylase Kinase; domain 1 1 35 - -
Vium4577g00004 284 SUPERFAMILY Protein kinase-like (PK-like) 1 238 IPR011009 -
Vium4577g00004 284 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 275 - -
Vium4577g00004 284 FunFam Shaggy-related protein kinase kappa 36 275 - -
Vium4577g00004 284 ProSitePatterns Serine/Threonine protein kinases active-site signature. 77 89 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4577g00004 Vium-Chr4577 9333 14230 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4577g00004 1 240 Core Cell Cycle Gene Families AT1G76540 35.743 5.56e-53 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vium4577g00004 Pkinase 6.3e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4577g00004 K14502 - gmx:100810237 523.472