Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4577g00002 ATGTCCACTTCTGATGCCAATGTGAATGACTCCGTGACTGGTCACATTATATCCACTACAATCGGAAGAAAAATTGGGAAGCCCAAACAGACTAGAACTTATCTGGCAGAACGCATTGTGGGGACTGGGTCATTTGGAATTGTCTTCCTGGCTAAATGCGTGGAAACTGGGGAGCTAGTGGCCATTAAGAAGGTTTTACAGGAGAGAAAAGGCAAGAGTCGTGAGCTACGGTTAATGCGCATGATGGACCATCCAAATGTGATCTCTCTGAAGGACCGGTTCTTTTCCACTACAAGTGAAGATGAACTTTTTCTTAATTTGGTGATGGAATATGTTCCTGAGTCTATGCATCGAGTCTCAAAGTTCTATAGTAACACTAATCAGAGCATGCCACTTATCTTTGTAAAACTTTACATGCACCAGATTTTCCGGGGACTGGCTTATATCCACACAGTCCCTGGAGTTTGCCACAGAGATTTGAAGCCTCAAAATATACTGGTTGATCCTCTTACACACCAGGTTAAGATATGTGATTTTGGAAGTGCAAAAGTGCTGGTTAAAGGTGAAGCTAATTTATCACACATATGTTCACTTTTCTATCGGGCACCCGAACTAATCTTTGGTGCCACTGAGTACACAACTTCAATTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAACTGCTTTTGGGCAAGCCATTATTTCCTGGCGACAATGCAGTGGACCAACTTGTAGAGATTATCAAGGTTCTTGGCACACCCTCCCAAGAGGAAGTTTGCAGTTCAAATTCAAGCAACAATGATTTCAAGTTTCCACAGATATTCCACCAAAATATGCCTCCAGAAGCAATTGATCTTACTTCCCGGCTCCTGCAGTATTCCCCAACCCATCGTTGTACTGCGCTAGAAGCATGTGCACACCCATTCTTTGATGAACTCCGTGAACCCAATGCTCAATTGCCAGATGGTCGGCCATTTCCCCCTCTATTCAACTTTAAACAAGAGTTATCCGGAGCTTCCCCAGAGCTTATTGATAAGTTAATACCTGATCATGCGAAGCTACAAAATACCCATTTTGGTGGAACATGA 1089 0.4334 MSTSDANVNDSVTGHIISTTIGRKIGKPKQTRTYLAERIVGTGSFGIVFLAKCVETGELVAIKKVLQERKGKSRELRLMRMMDHPNVISLKDRFFSTTSEDELFLNLVMEYVPESMHRVSKFYSNTNQSMPLIFVKLYMHQIFRGLAYIHTVPGVCHRDLKPQNILVDPLTHQVKICDFGSAKVLVKGEANLSHICSLFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGKPLFPGDNAVDQLVEIIKVLGTPSQEEVCSSNSSNNDFKFPQIFHQNMPPEAIDLTSRLLQYSPTHRCTALEACAHPFFDELREPNAQLPDGRPFPPLFNFKQELSGASPELIDKLIPDHAKLQNTHFGGT 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4577g00002 362 CDD STKc_GSK3 29 313 IPR039192 -
Vium4577g00002 362 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 7 353 - -
Vium4577g00002 362 Pfam Protein kinase domain 36 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4577g00002 362 Gene3D Transferase(Phosphotransferase) domain 1 114 353 - -
Vium4577g00002 362 SMART serkin_6 34 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4577g00002 362 SUPERFAMILY Protein kinase-like (PK-like) 29 334 IPR011009 -
Vium4577g00002 362 ProSitePatterns Protein kinases ATP-binding region signature. 40 64 IPR017441 GO:0005524
Vium4577g00002 362 ProSiteProfiles Protein kinase domain profile. 34 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4577g00002 362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
Vium4577g00002 362 FunFam Shaggy-related protein kinase kappa 114 353 - -
Vium4577g00002 362 FunFam Glycogen synthase kinase-3 beta 18 113 - -
Vium4577g00002 362 Gene3D Phosphorylase Kinase; domain 1 19 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4577g00002 Vium-Chr4577 9333 14232 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4577g00002 40 318 Core Cell Cycle Gene Families AT1G76540 35.374 2.79e-60 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vium4577g00002 Pkinase 6.4e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4577g00002 K14502 - gmx:100812801 630.943