Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4576g00010 ATGGAAAACCAAACCGGTCTCAAGCTCAGAATCTCTCGCATGTTCAGATCCTCCTTCGGTTCCTGTCGAACAAGACACATAGCCGATGTGATGGAAAAAGCAGTTTTTGCACCACCCACTTCCATTGACCCACCCTCTCCCAAAACCACACCCTTTGCTCCCTCTTGTAGGTCCAAAACAATCAATGACACTTGCATACTCTCCTTTGACGATTCTCATTCTCTCTCTAGACGCAAAATCTCACATTTTTCATCACCTTTTCTCTGGGCCAACACCACCACTGCCACCACCAACAACCTCAAGCTTAACCTCGGTGTCATGTCGTGTCCCCCCACTTCTCCCAAAGTTTCCCTTAACACAATCCAAGACCACGATTTCATTTTCCACGACAAGAAGAAGACTTCTTCTTCAACAAAAAACGTTAAGACCAAGAAAAAGAAGAAGAAGAAGAGACGTTCCCAGAAGAGAAGGGACTTTTTCCCTTTCAATTCATGCTCCAAAGACACCAACTTTGGTGGCTACTGGTGGTACAGCAGCAACGAAGACGATGAAACTGACACCCTTTTCTCCTCCAAGAGCCTCTCCTCCGACTCCTCCAGGTCCCGGCGCCGTGGCCGGAAAAGTGACCGGAGCTCCGACATGGGTGTTCTGCCGCTGCACGGGAAGGTGAAGGACACGTTCGCGGTGGTGAAGCGCTCGAGCGATCCTTACAGTGATTTCAGGACCTCGATGCTGGAGATGATCGTGGAGAAGCAGATATTTTCGCCAGCGGATTTGGAGAATCTCTTGCAGTGTTTTCTGTCTCTGAATTCGTATCATCATCATAAGATCATTGTCCAAGTCTTCACGGAGATTTGGGAGGCTTTGTTCTCTGACTGGTTTTGA 885 0.4836 MENQTGLKLRISRMFRSSFGSCRTRHIADVMEKAVFAPPTSIDPPSPKTTPFAPSCRSKTINDTCILSFDDSHSLSRRKISHFSSPFLWANTTTATTNNLKLNLGVMSCPPTSPKVSLNTIQDHDFIFHDKKKTSSSTKNVKTKKKKKKKRRSQKRRDFFPFNSCSKDTNFGGYWWYSSNEDDETDTLFSSKSLSSDSSRSRRRGRKSDRSSDMGVLPLHGKVKDTFAVVKRSSDPYSDFRTSMLEMIVEKQIFSPADLENLLQCFLSLNSYHHHKIIVQVFTEIWEALFSDWF 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4576g00010 294 MobiDBLite consensus disorder prediction 189 216 - -
Vium4576g00010 294 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 127 291 IPR038933 GO:0045892
Vium4576g00010 294 ProSiteProfiles OVATE domain profile. 229 288 IPR006458 -
Vium4576g00010 294 MobiDBLite consensus disorder prediction 138 155 - -
Vium4576g00010 294 MobiDBLite consensus disorder prediction 132 155 - -
Vium4576g00010 294 MobiDBLite consensus disorder prediction 197 213 - -
Vium4576g00010 294 Pfam Transcriptional repressor, ovate 233 290 IPR006458 -
Vium4576g00010 294 NCBIfam uncharacterized plant-specific domain TIGR01568 227 290 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4576g00010 Vium-Chr4576 67544 69315 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vium4576g00010 Ovate 3.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4576g00010 - - gmx:100776613 414.075