Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4576g00008 ATGACTTCTCTCTCCGTCTTTCCCTCACTCCCATCGCTTCAAAACCCTAACTTCACTCATCCCCGCCTCTCCAATTTCATCTATTTCCCTTTCAATTCCACGCAATCTTTTGCACCACTCTCTCGCCGTAATTTCTTATGCAGAGCTTTCAGAGATCCCGGCGAGGACATCAAAGCGGTCGTCAAGACCGACGACGGCGGCGGCGGAGATGGGGGTGGAGACGGTGGGGGGGACCGGGACTCGGAGAAAAAAGAAGGGCCTTTGCCGGAGTGGTTGAATTTCACTACTGATGACGCCAAAACGGTACTTGCTGCTATCGCAATTTCGCTTGCGTTTCGCACGTTCGTGGCGGAGCCTAGGTACATTCCCTCGCTGTCAATGTACCCTACATTTGATGTTGGCGATAGAATTGTTGCTGAAAAGGTTTCTTACTATTTTAGAAAACCATGTGCAAGTGACATAGTGATATTCAAAAGCCCTCCTGTGCTCCAAGAAGTTGGATATAGTGATGACGATGTTTTTATAAAGCGTGTGGTTGCAAAGGAAGGTGATATTGTGGAGGTCCGTAAAGGGCATCTTGTAGTTAATGGGGTTGAGAGGAATGAAGACTACATTCTTGAACCACCTGCATATGAGATGAAACCCACACGTGTACCAGAAAATTACGTGTTTGTGATGGGAGACAATCGCAATAACAGCTATGATTCCCATGTGTGGGGTCCCCTGCCATCCAAGAACATCATAGGGAGATCAGTATTTCGGTATTGGCCACCAAATAGAATTGCTGGCACAATTTCTAAGGATAGCTGCAGTGTTGAAACCACGCAGGAGGGTGCAGAGACTGCTCTACCTTCTCAATGA 861 0.4762 MTSLSVFPSLPSLQNPNFTHPRLSNFIYFPFNSTQSFAPLSRRNFLCRAFRDPGEDIKAVVKTDDGGGGDGGGDGGGDRDSEKKEGPLPEWLNFTTDDAKTVLAAIAISLAFRTFVAEPRYIPSLSMYPTFDVGDRIVAEKVSYYFRKPCASDIVIFKSPPVLQEVGYSDDDVFIKRVVAKEGDIVEVRKGHLVVNGVERNEDYILEPPAYEMKPTRVPENYVFVMGDNRNNSYDSHVWGPLPSKNIIGRSVFRYWPPNRIAGTISKDSCSVETTQEGAETALPSQ 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4576g00008 286 PRINTS Bacterial leader peptidase 1 (S26A) family signature 115 131 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vium4576g00008 286 PRINTS Bacterial leader peptidase 1 (S26A) family signature 218 237 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vium4576g00008 286 PRINTS Bacterial leader peptidase 1 (S26A) family signature 174 186 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vium4576g00008 286 SUPERFAMILY LexA/Signal peptidase 113 262 IPR036286 -
Vium4576g00008 286 FunFam Peptidase/ serine-type peptidase 124 255 - -
Vium4576g00008 286 MobiDBLite consensus disorder prediction 59 89 - -
Vium4576g00008 286 ProSitePatterns Signal peptidases I signature 3. 223 236 IPR019758 GO:0004252|GO:0016020
Vium4576g00008 286 CDD S26_SPase_I 118 250 IPR019533 GO:0004252|GO:0006465
Vium4576g00008 286 Pfam Signal peptidase, peptidase S26 99 256 IPR019533 GO:0004252|GO:0006465
Vium4576g00008 286 PANTHER SIGNAL PEPTIDASE I 86 262 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vium4576g00008 286 ProSitePatterns Signal peptidases I serine active site. 124 131 IPR019756 GO:0004252|GO:0016020
Vium4576g00008 286 NCBIfam signal peptidase I 100 258 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vium4576g00008 286 Gene3D Umud Fragment, subunit A 112 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4576g00008 Vium-Chr4576 37146 40210 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4576g00008 127 257 MADS-box Gene Family AT1G29960 31.818 2.09e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4576g00008 K03100 - gmx:100815810 461.84