Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4570g00003 ATGAATCCAAAAGGAGGCTTATGTGCTAATTACTTCAAAACGTCCTCAGAACCTCCCTTTTTCTATGGTTTCGGAATTGAATTACCTTTCAATGAATTCAACCCTCCCTCTCTTCCAATCCAATCTGTACTTCCAGGTCAATCTAACACAGATGTTGAGATCCCTGACCAAGAAAATTGTCCACTAAGTGACTCATCAAATACCAGCAAGCTCCAAGATTGGAATCCAGGTGCAATGTTGAACAATCTTTCGTTCCTTGAAGAAAAGATTCATCAGCTCCGGGATCTAGTGCATTTAATTGTCAATAAAAAGTGCCAACCCTTTGGACAATCTCACGAACTAGTGACTCAGGAACAGCAGCTCGTCACAGCTGATCTTACATCAATTATTGTTCAATTGATCTCTACTGCTGGAAGTCTTCTTCCCTCTGTTAGGCACACCCTCACTACAAATCCCTTGGTTGGCCAGATTGACCAGCTTCATGGGATTAACCTCCCTTTTGGATCAGAACCAAGTACTGGCATTAACCCACAAAATAATAGTGGAAATAAACTGTTCGATAAGTCCACTCCGAATGATCTACCAAATACTTGTGAAATGGAGCAAAACTATAACATGGAAGAACACGAGCCAAAAGATGAAGAAGATGTGGATGAGGGAGAGAGTCTTCCACCCGGTTCCTATGAGATTTTACAGTTGGAAAAAGAAGAAATTCTTGCCCCTCACACACATTTCTGTACAATATGTGGGAAAGGATTCAAGAGGGATGCAAATCTCCGAATGCACATGCGTGGCCATGGTGATGAGTACAAAACCCCTGCAGCTCTTGCAAAACCGCATAAAGAAACCGGGTCCGAACCGAAGCTTATCAAGAGGTATTCCTGCCCCTATGCCGGCTGCAAGCGTAACAAGGATCACAAGAAATTCCAACCACTAAAGACTATTTTGTGTGTCAAAAACCACTACAAGAGAACGCACTGTGACAAGAGCTATATTTGCAGCAGATGCAACACCAAGAAGTTTTCAGTCATGGCAGACCTTAAAACTCATGAAAAACACTGTGGCAAGGATAAATGGCTCTGTTCTTGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTTGGACACATTGCTCTTTTCCAAGGCCATACACCGGCTATTCCTTTGGATGACACCAAAGCAGTGGCCGAGCCACCTGATCCCCAGAACCGAGAATGCAGCAGCAATAAGGTAGGAAGTGTGAACTTCTGTTTTGGATCAAAGCCTTCAAGTGAAAATGTAGTTCAAAACATGATGGATATGAAAGGTAATATTGATGATCCTGTGAATTATTTCTCGTCGCTGAACTTCGAAGGCTGTAACTTTGGGTCGTTTAGTGAATTCCCTCAAACTCCATTTGAAGATTCAGAAGGTTCTTTCTCTTTTCTCATGTCAGGATCCTTTAATTATGGTACTAAATTTGGTGGTGGTGAATCAAGTTCCGACAATCTGTTGTGA 1497 0.4215 MNPKGGLCANYFKTSSEPPFFYGFGIELPFNEFNPPSLPIQSVLPGQSNTDVEIPDQENCPLSDSSNTSKLQDWNPGAMLNNLSFLEEKIHQLRDLVHLIVNKKCQPFGQSHELVTQEQQLVTADLTSIIVQLISTAGSLLPSVRHTLTTNPLVGQIDQLHGINLPFGSEPSTGINPQNNSGNKLFDKSTPNDLPNTCEMEQNYNMEEHEPKDEEDVDEGESLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKETGSEPKLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYICSRCNTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDDTKAVAEPPDPQNRECSSNKVGSVNFCFGSKPSSENVVQNMMDMKGNIDDPVNYFSSLNFEGCNFGSFSEFPQTPFEDSEGSFSFLMSGSFNYGTKFGGGESSSDNLL 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4570g00003 498 ProSitePatterns Zinc finger C2H2 type domain signature. 246 266 IPR013087 -
Vium4570g00003 498 SMART c2h2final6 331 353 IPR013087 -
Vium4570g00003 498 SMART c2h2final6 293 326 IPR013087 -
Vium4570g00003 498 SMART c2h2final6 244 266 IPR013087 -
Vium4570g00003 498 SUPERFAMILY beta-beta-alpha zinc fingers 242 269 IPR036236 -
Vium4570g00003 498 ProSiteProfiles Zinc finger C2H2 type domain profile. 244 271 IPR013087 -
Vium4570g00003 498 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 66 468 IPR044300 GO:0010044|GO:0010447
Vium4570g00003 498 Gene3D Classic Zinc Finger 228 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4570g00003 Vium-Chr4570 19071 21879 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4570g00003 212 498 C2H2 Transcription Factor Family AT1G34370 68.836 4.69e-137 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium4570g00003 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4570g00003 - - gmx:100801536 897.886