Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4566g00001 ATGGATTTTGAGAATGCTTGCAGGCTTTTTGGTTTGGCCAATTTGCTTAGATTGATGCGTTGTGCTGAACCATCTCAAAGACAAGTTATGGCTAATTCCATTCTAACTGAGGCTAACATGTATGGCAATGATCCCATTCATGGTGCCCTAGGTCAAGTTCTTAATTTGAACAATCAAATCCAATCTGTTCAAAGAGAATTAGACTTTGTAAACACTATGCTTGCTCAATGCTCACTTCAATCAACTTCACATGTGGATGATGTTGTCGCTGGTTCTTCTCACCCAGGACAATCAAGTACTGTTGCACCTCGTGAGAAAGAGGGTGGGGCTCAAGAGAAAGATGCCGAGTATAAGAGAAAGAATAAGAAAGATCATTGA 378 0.4048 MDFENACRLFGLANLLRLMRCAEPSQRQVMANSILTEANMYGNDPIHGALGQVLNLNNQIQSVQRELDFVNTMLAQCSLQSTSHVDDVVAGSSHPGQSSTVAPREKEGGAQEKDAEYKRKNKKDH 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4566g00001 125 ProSiteProfiles LOB domain profile. 1 74 IPR004883 -
Vium4566g00001 125 MobiDBLite consensus disorder prediction 86 125 - -
Vium4566g00001 125 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 106 - -
Vium4566g00001 125 Coils Coil 53 73 - -
Vium4566g00001 125 MobiDBLite consensus disorder prediction 86 100 - -
Vium4566g00001 125 MobiDBLite consensus disorder prediction 106 125 - -
Vium4566g00001 125 Pfam Lateral organ boundaries (LOB) domain 2 70 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4566g00001 Vium-Chr4566 35051 35983 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4566g00001 2 61 AS2 family AT2G19820 39.344 9.72e-11 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium4566g00001 LOB 9.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4566g00001 - - var:108320247 251.136