Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium455g00001 ATGGCTAATGAAGATGAACCCAATAACCACCTCTTGGGCATCAGAAATCTCTCTCATAAGACTTTCCTTCATAGCGATGCACTCTATCAGTACATACTTGAAACCAGTATTTATCCAAGAGAGCACGAGTGCTTGAAGGAGATCCGCGAGATGACAGAAAAACACCCTCGGAACATAATGGCTACACCACCAGACGAAGGACAATTTCTGAGCATGCTTATTAAGCTCATTAATGCCAAGAACACCTTGGAAATTGGTGTATACACCGGTTACTCTTTAATATTGGGGAAAAAATTGCTTTGGTGA 306 0.415 MANEDEPNNHLLGIRNLSHKTFLHSDALYQYILETSIYPREHECLKEIREMTEKHPRNIMATPPDEGQFLSMLIKLINAKNTLEIGVYTGYSLILGKKLLW 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium455g00001 101 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 21 101 IPR002935 GO:0008171
Vium455g00001 101 Pfam O-methyltransferase 34 94 IPR002935 GO:0008171
Vium455g00001 101 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 25 95 IPR029063 -
Vium455g00001 101 Gene3D Vaccinia Virus protein VP39 11 97 IPR029063 -
Vium455g00001 101 PANTHER O-METHYLTRANSFERASE-RELATED 18 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium455g00001 Vium-Chr455 54213 54746 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium455g00001 4 94 Monolignol Biosynthesis Gene Families AT4G34050 65.934 1.57e-37 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium455g00001 K00588 - var:108322632 200.29