Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4558g00018 ATGGGTCTTAGAGACATTGGTGCTTCACTGCCCCCAGGGTTTCGCTTTTATCCCAGTGACGAGGAGTTGGTCCTTCATTACCTCTACAAAAAGGTCACAAATGAGGAAATTCTAAAGGGTACCCTCATGGAAATCGACTTGCATACATGCGAGCCATGGCAACTTCCAGAGGTGGCTAAGCTTAACGCAAACGAATGGTACTTCTTCAGCTTTCGTGACCGCAAATATGCAACCGGCTACCGAACGAATCGTGCAACGACATCTGGCTATTGGAAAGCCACGGGAAAGGATCGTACGGTTTTTGACCCCTCCACGCGTGAGGTTGTAGGGATGAGGAAGACTTTGGTGTTCTACAGGAACAGGGCCCCGAATGGCATCAAAACGGGTTGGATCATGCACGAGTTTCGCTTGGAGACGCCACATATGCCCCCTAAGGAGGACTGGGTTTTGTGTAGAGTGTTTCACAAAGGAAAAGCAGACAACGTTAACAGTGCCAAACTCATGTATGAGAACACAGTTCCATCCCTAACTCTGGCTTCGTCATCTCCAACCAACCAAACCATTGGGTATAACCAACTTCCCCATTTCTCTTCCTCAATCACACCCCATCATAATCATTACCATCATCATCATCATCATCAAAATCAAACCCAAAACAACAACTCCTTCATGGGTGTCCTTCACTTTTCTAGGGAAACAAATGCAAACTCTAGCACCATCACTCAGATAAGTCCCAAATGTGATGATGGCTATGGCTTTCTATGGGACATGGAGATCGAAGAAAATAGCTTCCATGATGCCGTGGCCTCCAACACGGTCGACGGAATGAGATTCGAGGTTGATAATAATAGTGTGGTCTTGTTATGA 867 0.4648 MGLRDIGASLPPGFRFYPSDEELVLHYLYKKVTNEEILKGTLMEIDLHTCEPWQLPEVAKLNANEWYFFSFRDRKYATGYRTNRATTSGYWKATGKDRTVFDPSTREVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKGKADNVNSAKLMYENTVPSLTLASSSPTNQTIGYNQLPHFSSSITPHHNHYHHHHHHQNQTQNNNSFMGVLHFSRETNANSSTITQISPKCDDGYGFLWDMEIEENSFHDAVASNTVDGMRFEVDNNSVVLL 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4558g00018 288 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 227 - -
Vium4558g00018 288 Gene3D NAC domain 19 160 IPR036093 GO:0003677|GO:0006355
Vium4558g00018 288 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Vium4558g00018 288 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Vium4558g00018 288 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4558g00018 Vium-Chr4558 269524 273932 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4558g00018 6 221 NAC Transcription Factor Family AT1G56010 47.458 4.80e-63 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium4558g00018 NAM 6.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4558g00018 - - gmx:100783645 482.641