Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4558g00016 ATGCATATAGGTCAGACAGATACAACTTCTGTGAAATGTCTGATCAACAGCATTTCTCGATTCATTCATCTGGTTTCATGTCAAACAATGAAACCTATGCCCTTTCAGAAGATCTGTAATAATATGGTTGGGGTGTTAAAGCGTTTGAAGCCGGTGCTTGATGACGTTATGGATCACCAAATTCCATCAGATGTAAATCTATGTAAAGAGTGTGAGGAATTGGATAAGCGAGTTAATGAAGCTAGAGATTTCATTGAAAAATGGAGTCCAAAGATGAGCAGGATTCACAGTGTTCTACAAGGTGGTACATTGTTGATCAAGTTACAAAGCACTTCACTAGATATCTGTCACATGATAGTTAGATCCTTACAGTCACCTCCATCTGTATCAGTTTTGGCTAATCTCCAGCACTATATCCAGGAACTTCAGTGTCTCAAGAAGGAAATTGCAATGGTCCATATAGAAGAAGCACTGAGAAACCAAAGAGACAATATTGAACCATGCAAGGAGCATCTGACGGAAATTATCGAGTTACTTAAATTGAAACCAAATCAGGAGCTCTTAAAAGAAAGCATTGCTGTGGAAAAGGAAAGGTTGAACACTGAAGCCAATAAAATGATAGCGGACATAGAAGAAATTAATGAAATTGTGAATCTTGTCCGTAGTTTGCGCGATTATATGATCAAAACTGAGTGCCCTGTAGTCAAGAGTGGTCTCTCAATCCCTCCATACTTCCTCTGTCCTTTATCGTTGGAACTCATGTTGGATCCTGTTATTGTGGCTTCAGGTCAAACATATGAGAGGCAATCCATCCAAAAGTGGCTTGATCATGGGCTGACAGTTTGTCCCAAAACTCGTCAGAGACTTACTCATACAAATCTCATTCCTAATTACACTGTCAAAGCCATGATAGCAACTTGGTGTGAGGAAAATGATGTTAAACTTTCTGGTATCTCTGACCACAAAAAATATGCCTGTGTCACATCCTCCATGGATAATTTATTGCCTCAAGATTTAACTCATGATTGCCGTGTTGGGTCTCTCTCTAGTAGCAATTCCATTTCAAGATCATCTCTTCAAACTGAAAATGCATTTGAAAAGCAAAAGGCTGATAACTCTTTTAGATTATGTGGAGAATACAATGGATGCCAGAGTGGAGCAGCTGAAAGGTGTGAGCAAGAGTCCCCATATACTCACAGCAGAAGTGAATCATTTTCAAGTTCAATTTCTAGTACTGATTGTGCAGTTTCAAAAGAGGTGTCGATATCCAACAGGCATCAAAATGTGAAGGTGCTCTCTGGAGAAATCACAAACACGTGTCCTTCTCCTGGTAACAAACAATCAGGGATATCTCCTTGGTTATCTGGAAAAACATTTCAAAACCCTGGATCAAATGTGGGATTGTTGGAGAATGGAAATCATAATGATAATAATAATAGTGATAGTCTGTCAAGATATGATTCACATTCTGTTTCAAACTCCGGGTCAGATGAATTGACCACCACATCTCATGTCATTAGATTGATTGAAGACCTTCACAGTCAATCAGTTGAAACACGGACTACTGCTGCTGAAGAATTGAGACTCCTTACAAAGCATAACCAGGAAAACCGTGTCATTGTAGGGCAGTGTGGGGCTGCCATGCCTTTGCTTTCATTGCTACATTCAGACGTGAAGGTAACACAAGAGCATGCTGTGACAGCTCTACTAAACTTGTCAATTAATGAAGAGAACAAGGCCTTGATCATGGAAGCAGGAGCCATAGAGCCTCTTATCCATGTTTTGAAGACAGGAAATGATAATGCCAAGGCGAATTCTGCAGCAACACTATTCAGCCTCTCAGTACTTGAGAACAATAAGGCAAGAATTGGCCGTTCCAGGGCTGTTAAAGCTTTGGTTGATCTTCTTGCCTCAGGGACTCTTAGAGGAAAGAAGGATGCTGCTACTGCTTTATTTAACCTTTCAATATTTCATGAGAATAAAGCTCGTATAGTTCAAGCTGGAGCAGTGAAATTTCTGGTTCGGTTATTAGATGATGCTGGTGGAATGGTTGACAAGTCTGTTGCTCTTCTGTCAAACCTGTCAACCATTCCAGAGGGCCGATTAGAAATTGCAAGGGAAAGGGGTATCCCCTTACTTGTTGAAGTTGTTGAGTCAGGTTCTCAGAGGGGAAAGGAAAATGCTGCCTCCATTCTCTTGCAAATATGCCTTCATAGTACTAAGTTCTGTAATCTGGTTTTGCAAGAAGGCGCTGTCCCTCCCCTAGTTGCATTGTCAGTATCTGGTACACCAAGAGCAAAGGAAAAGGCACAACAGCTTCTCAGCCATTTTCGCAATCAGCGGGAAATAGCTGCTTCTGGGAAGGGAAAATCATGA 2376 0.4082 MHIGQTDTTSVKCLINSISRFIHLVSCQTMKPMPFQKICNNMVGVLKRLKPVLDDVMDHQIPSDVNLCKECEELDKRVNEARDFIEKWSPKMSRIHSVLQGGTLLIKLQSTSLDICHMIVRSLQSPPSVSVLANLQHYIQELQCLKKEIAMVHIEEALRNQRDNIEPCKEHLTEIIELLKLKPNQELLKESIAVEKERLNTEANKMIADIEEINEIVNLVRSLRDYMIKTECPVVKSGLSIPPYFLCPLSLELMLDPVIVASGQTYERQSIQKWLDHGLTVCPKTRQRLTHTNLIPNYTVKAMIATWCEENDVKLSGISDHKKYACVTSSMDNLLPQDLTHDCRVGSLSSSNSISRSSLQTENAFEKQKADNSFRLCGEYNGCQSGAAERCEQESPYTHSRSESFSSSISSTDCAVSKEVSISNRHQNVKVLSGEITNTCPSPGNKQSGISPWLSGKTFQNPGSNVGLLENGNHNDNNNSDSLSRYDSHSVSNSGSDELTTTSHVIRLIEDLHSQSVETRTTAAEELRLLTKHNQENRVIVGQCGAAMPLLSLLHSDVKVTQEHAVTALLNLSINEENKALIMEAGAIEPLIHVLKTGNDNAKANSAATLFSLSVLENNKARIGRSRAVKALVDLLASGTLRGKKDAATALFNLSIFHENKARIVQAGAVKFLVRLLDDAGGMVDKSVALLSNLSTIPEGRLEIARERGIPLLVEVVESGSQRGKENAASILLQICLHSTKFCNLVLQEGAVPPLVALSVSGTPRAKEKAQQLLSHFRNQREIAASGKGKS 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4558g00016 791 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 627 669 IPR000225 GO:0005515
Vium4558g00016 791 FunFam RING-type E3 ubiquitin transferase 238 314 - -
Vium4558g00016 791 MobiDBLite consensus disorder prediction 435 498 - -
Vium4558g00016 791 Gene3D - 580 786 IPR011989 -
Vium4558g00016 791 Gene3D - 468 579 IPR011989 -
Vium4558g00016 791 ProSiteProfiles U-box domain profile. 240 314 IPR003613 GO:0004842|GO:0016567
Vium4558g00016 791 SUPERFAMILY ARM repeat 507 777 IPR016024 -
Vium4558g00016 791 Pfam Armadillo/beta-catenin-like repeat 619 655 IPR000225 GO:0005515
Vium4558g00016 791 Pfam Armadillo/beta-catenin-like repeat 534 573 IPR000225 GO:0005515
Vium4558g00016 791 Pfam Armadillo/beta-catenin-like repeat 575 614 IPR000225 GO:0005515
Vium4558g00016 791 FunFam RING-type E3 ubiquitin transferase 488 783 - -
Vium4558g00016 791 Coils Coil 196 216 - -
Vium4558g00016 791 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 545 587 IPR000225 GO:0005515
Vium4558g00016 791 SUPERFAMILY RING/U-box 240 315 - -
Vium4558g00016 791 CDD RING-Ubox_PUB 242 294 IPR045210 -
Vium4558g00016 791 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 668 709 IPR000225 GO:0005515
Vium4558g00016 791 SMART arm_5 575 615 IPR000225 GO:0005515
Vium4558g00016 791 SMART arm_5 616 656 IPR000225 GO:0005515
Vium4558g00016 791 SMART arm_5 657 696 IPR000225 GO:0005515
Vium4558g00016 791 SMART arm_5 534 574 IPR000225 GO:0005515
Vium4558g00016 791 SMART arm_5 697 737 IPR000225 GO:0005515
Vium4558g00016 791 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 315 IPR013083 -
Vium4558g00016 791 PANTHER U BOX DOMAIN-CONTAINING 34 778 - -
Vium4558g00016 791 SMART Ubox_2 244 307 IPR003613 GO:0004842|GO:0016567
Vium4558g00016 791 Pfam U-box domain 241 311 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4558g00016 Vium-Chr4558 210085 215503 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4558g00016 7 791 U-box Gene Family AT3G54790 54.591 0.0 713
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4558g00016 - - gmx:100800949 1302.35