Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4558g00003 ATGGATTTTGATTCATCTATGTTCCAGTACGAAAGCCTTAACAGTCCCTTTGTAAATTCTTCTGTGTGTGCAGAAACATTCCATTGGGAGGAGTTTTTTCTCTTCAATGAAGAAAACAACACCAATATTCCCTTCAGCTTCAATGAGCAGTCACAGATGAAGGAATCATCCTCATCAGATTCCAACTCTTCAGGGTGTTTGGTGAGCAGTGAGTCACAGGTGGAAGTGTCCTCCAATCTAAGTGATGCAAGCGAAGGACATGTGGTGAAAGAAGCACAAGGTCCTAAGGAGAAGAGACCCTTTAGGGGAGTGAGGAGAAGGCCATGGGGGAAGTTTGCCGCTGAGATAAGAGACTCCACAAGAAATGGTGTTAGAGTGTGGATAGGCACATTTGACACAGCAGAAGCTGCAGCACTTGCCTATGACCAAGCAGCTTTCTCCACAAGAGGTTCCATGGCAGTGCTCAACTTTCCAGAAGAAGTTGTGAGAGAATCACTGAAAGACATGCCCAACAAGCCATGGGAAGATGGTTCCTCACCAGTGTTGGCACTCAAGAAGAAACACACCATGAGAAGAAAATCCAAAGCCACAAACAAAAAGCCCAAAAGGGACCACCACCATGGAAATGTGCTTTCACAGAATGTCTTGGTGCTCGAGGATTTGGGCTCTGACTACTTGGAACAGCTTCTCAGCTTAACTTCTTCTTCTTCTTCTGATCATGTCTTTTTCTAG 732 0.4508 MDFDSSMFQYESLNSPFVNSSVCAETFHWEEFFLFNEENNTNIPFSFNEQSQMKESSSSDSNSSGCLVSSESQVEVSSNLSDASEGHVVKEAQGPKEKRPFRGVRRRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFSTRGSMAVLNFPEEVVRESLKDMPNKPWEDGSSPVLALKKKHTMRRKSKATNKKPKRDHHHGNVLSQNVLVLEDLGSDYLEQLLSLTSSSSSDHVFF 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4558g00003 243 SMART rav1_2 100 164 IPR001471 GO:0003700|GO:0006355
Vium4558g00003 243 MobiDBLite consensus disorder prediction 186 206 - -
Vium4558g00003 243 Gene3D AP2/ERF domain 100 160 IPR036955 GO:0003700|GO:0006355
Vium4558g00003 243 PANTHER DNA-BINDING DOMAIN 56 234 IPR044808 GO:0003700|GO:0009873
Vium4558g00003 243 MobiDBLite consensus disorder prediction 77 103 - -
Vium4558g00003 243 SUPERFAMILY DNA-binding domain 101 159 IPR016177 GO:0003677
Vium4558g00003 243 PRINTS Ethylene responsive element binding protein signature 124 140 IPR001471 GO:0003700|GO:0006355
Vium4558g00003 243 PRINTS Ethylene responsive element binding protein signature 101 112 IPR001471 GO:0003700|GO:0006355
Vium4558g00003 243 ProSiteProfiles AP2/ERF domain profile. 100 158 IPR001471 GO:0003700|GO:0006355
Vium4558g00003 243 Pfam AP2 domain 101 150 IPR001471 GO:0003700|GO:0006355
Vium4558g00003 243 FunFam Ethylene-responsive transcription factor 2 99 159 - -
Vium4558g00003 243 CDD AP2 101 159 IPR001471 GO:0003700|GO:0006355
Vium4558g00003 243 MobiDBLite consensus disorder prediction 186 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4558g00003 Vium-Chr4558 39154 40114 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4558g00003 65 238 AP2-EREBP Transcription Factor Family AT3G23240 54.286 1.05e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium4558g00003 AP2 2.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4558g00003 K14516 - gmx:100784784 306.605