Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4558g00001 ATGGAGGGAGGAAGATCTTCGGTTTCTAATGGAAATGTTGAGGCTCGGTATAGAGGGATTCGGAGAAGGCCATGGGGAAAGTTTGCTGCAGAGATTCGTGACCCTACAAGGAAAGGGACTCGGATATGGCTTGGAACCTTCGAAACTGCAGAACAAGCTGCACGAGCTTATGATGCTGCTGCTTTTCATTTTCGTGGCCACAGAGCCATTCTCAACTTCCCAAATGAGTATCAGTCTTCTAATCCAAACTCTTCTTTGCCTATGCCTTTAACAACACTTCCACCTGCTTCCTCTTCCTCTTCCTCTTCTTCTTCTTCCTATTCTTCTTACTCTATTGATAACCTTGCGGGACCTGTTTTTTCTGGAGAAAGTATGCAAGGTGATGATACTTTTGAGTTGGAGTACTTGGACAATAAGTTGCTTGAAGAACTCCTTCAGATGCAAGATAACAGACATCTCTTCAAGTGA 468 0.4402 MEGGRSSVSNGNVEARYRGIRRRPWGKFAAEIRDPTRKGTRIWLGTFETAEQAARAYDAAAFHFRGHRAILNFPNEYQSSNPNSSLPMPLTTLPPASSSSSSSSSSYSSYSIDNLAGPVFSGESMQGDDTFELEYLDNKLLEELLQMQDNRHLFK 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4558g00001 155 CDD AP2 15 75 IPR001471 GO:0003700|GO:0006355
Vium4558g00001 155 MobiDBLite consensus disorder prediction 75 106 - -
Vium4558g00001 155 FunFam Ethylene-responsive transcription factor 2 15 75 - -
Vium4558g00001 155 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Vium4558g00001 155 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Vium4558g00001 155 ProSiteProfiles AP2/ERF domain profile. 16 74 IPR001471 GO:0003700|GO:0006355
Vium4558g00001 155 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Vium4558g00001 155 PANTHER DNA-BINDING DOMAIN 13 145 IPR044808 GO:0003700|GO:0009873
Vium4558g00001 155 Gene3D AP2/ERF domain 15 75 IPR036955 GO:0003700|GO:0006355
Vium4558g00001 155 Pfam AP2 domain 16 67 IPR001471 GO:0003700|GO:0006355
Vium4558g00001 155 SMART rav1_2 16 80 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4558g00001 Vium-Chr4558 13849 14705 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4558g00001 14 152 AP2-EREBP Transcription Factor Family AT3G23230 56.429 1.57e-40 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium4558g00001 AP2 8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4558g00001 - - gmx:100779173 212.616