Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4555g00001 ATGTCATGTTTAATTTATTTACCATTCATATCTCGGTGCAGTAAATGCCATGCTAACTATGTACTCATCATGCAGATAATTTTCAGAGATTTCAAATCTTCAAATATCCTTTTGGATGAACAATGGAATGCAAAGCTCTCAGACTTTGGGTTGGCAAGGTTGGGACCATCGGATGGACTGACTCATGTCTCAACAGCGGTTGTAGGAACAATGGGATATGCATCTCCAGAATATGTTCAAACTGGACGTCTAACATCAAAGAATGACGTGTGGAGCTACGGTGTCTTCCTTTATGAACTCATCACCGGTAGGCGCCCTATAGATCGAAATCGCCCCAGGGGTGAGCAGAAGCTCTTGGAATGGATAAGGCCATACCTATCAGATGGGAGAAAATTTCAACTAATATTAGACCCAAGACTAGATAAGAAACAAATCTTCAAATCAGCCCATAGACTTTCTATGATAGCAAACCGATGCTTGGTAAAAAATCCAAAGAATCGCCCAAAGATGAGTGAGGTATTGGAAATGGTGAATGGGATGTTAGAATCTTCCTCACCCCGTTCCAGTCCACCATTGCCCTTGAGGAGTGTGGCAAGAGTGGAAACTTCCCAGGATACTGAAACAAATAACAAGAAACGGACC 642 0.4221 MSCLIYLPFISRCSKCHANYVLIMQIIFRDFKSSNILLDEQWNAKLSDFGLARLGPSDGLTHVSTAVVGTMGYASPEYVQTGRLTSKNDVWSYGVFLYELITGRRPIDRNRPRGEQKLLEWIRPYLSDGRKFQLILDPRLDKKQIFKSAHRLSMIANRCLVKNPKNRPKMSEVLEMVNGMLESSSPRSSPPLPLRSVARVETSQDTETNNKKRT 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4555g00001 214 ProSiteProfiles Protein kinase domain profile. 1 181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4555g00001 214 Pfam Protein kinase domain 20 175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4555g00001 214 Gene3D Transferase(Phosphotransferase) domain 1 12 190 - -
Vium4555g00001 214 SUPERFAMILY Protein kinase-like (PK-like) 18 201 IPR011009 -
Vium4555g00001 214 PANTHER OS01G0588500 PROTEIN-RELATED 25 178 - -
Vium4555g00001 214 MobiDBLite consensus disorder prediction 180 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4555g00001 Vium-Chr4555 5 1601 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4555g00001 26 175 Receptor kinase-like Gene Family AT3G58690 49.333 7.47e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium4555g00001 Pkinase 4.2e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4555g00001 - - vum:124838335 421.779