Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4547g00005 ATGGGACGAGTGAATAATGAAATTGAGGATGAAGTGCTTCCCAGTGATGTGAGTGCAGCACAGTCAAATGGTGAGAGTTATGAAGGAAGTACCAGTGTTGTTCTGAAGAAAGGGCCGTGGACATCAACTGAAGATGATATTTTGGTGGATTATGTCAACAAAAATGGGGAGGGGAATTGGAATGCAGTTCAGAAGCACACAGGGTTATTACGTTGTGGAAAAAGTTGTCGGCTGCGATGGGCTAATCACCTAAGGCCAAATTTAAAGAAAGGGGCGTTTACTGCAGAAGAAGAGCGGTTCATTGCTGAACTTCATGCCAAAATGGGAAACAAATGGGCACGCATGGCAGCACATTTGCCTGGTCGCACCGATAATGAAATAAAGAATTATTGGAACACCCGGATCAAGAGGCGTCAGCGGGCTGGGTTGCCACTTTACCCTCCAGAAGTGTCTTTGCAAGGTTTTCAAGAGAGTCAGCGTAACCAAAGCAATGGTGGACTTAATGGTGGCAATAGAATGCATCTTGATATGTTGCAGAAAAATAGTTATGAGATACATGGTGCTATATTTGATAGTCTGAAGGATAATCAGGGAATCTTACCTTATGCACCTAAGTTTTCCGATGTTTCTGTTTGTGGCAATATGCTGAAAGGTCTTGATTCTTCTTCTCAATATTGTAGCGTTATGCCACCAGCATCACCTAAGAACAAGCGTCTTAGAGAGTCAACAATACCGTTTAATGGTTCCAAGGATAAGAAAAACAATGGTCTATATCCATTTTGTCAAAATCGGGACAATAATTCTGATAAGATTGCACACTCATTTGGAATGCAAACACTCCTTGATCCTGGTCCCTCCTCACACAACTCAATGTGTTACAGCCATTCACTTTCAAATGGCAATTCCTCTACTTCTAAGCCAACTTTTGAGGCTGTGAAGTTGGAGCTCCCTTCACTCCAATATCCAGAACTTCATTTAGGTAGCTGGGGTACATCTCCCCCACCTCCCATGCTCGAGTCAGTTGATGATTTCTTTCAGTCTCATACACCAATTAGTACACTCGAGTCAGATTGTTCTTCTCCACAAAATAGTGGCCTGCTGGATGCCTTACTTTATCAGGCAAAGACTCTGAGCAGTTCAAGGAACCATTGTTCTGACAAAGGTTCAAATTCTTCTACTGCAACCCCTGGTGACAGAGGTGACAACTCTGCTTTGAATGTGTACGAGACAGAATGGGAAGATTACGCCGACCCTGTATCTCCCTTTGGTGCGACTTCAATATTGAATGAGTGCCCTGCTCTTATAGGCAGTGAGAATTCATTGGACGAACAGCTATCTCTCCAGACATTTACTGGCAATATTCCAAAATTAGAGTTTGTTGATCAGGTTTGGACTCCAGACAATGAAAATCAAACCTTGTCCTTCTTGAATATCACTCGTCCAGACTTATTGTTTGCTTCAGATTGGCATGAGCTAGGTTTTGGGCATGGCAAGAACCAGGCCATCACAACTGATACAACAACGACCCTTCTTGGAGACGATTTTGCCGCTGACCATAAGCATATGACTTCTGGAACTTCTCAGTCAAGTCAGGTGTGGGGTTTTGGTTCTTGTGCATCGGCAGCCAATAATATGCATGCCCTCTGTCACCTATCCGATCTTGGTTAA 1668 0.4341 MGRVNNEIEDEVLPSDVSAAQSNGESYEGSTSVVLKKGPWTSTEDDILVDYVNKNGEGNWNAVQKHTGLLRCGKSCRLRWANHLRPNLKKGAFTAEEERFIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVSLQGFQESQRNQSNGGLNGGNRMHLDMLQKNSYEIHGAIFDSLKDNQGILPYAPKFSDVSVCGNMLKGLDSSSQYCSVMPPASPKNKRLRESTIPFNGSKDKKNNGLYPFCQNRDNNSDKIAHSFGMQTLLDPGPSSHNSMCYSHSLSNGNSSTSKPTFEAVKLELPSLQYPELHLGSWGTSPPPPMLESVDDFFQSHTPISTLESDCSSPQNSGLLDALLYQAKTLSSSRNHCSDKGSNSSTATPGDRGDNSALNVYETEWEDYADPVSPFGATSILNECPALIGSENSLDEQLSLQTFTGNIPKLEFVDQVWTPDNENQTLSFLNITRPDLLFASDWHELGFGHGKNQAITTDTTTTLLGDDFAADHKHMTSGTSQSSQVWGFGSCASAANNMHALCHLSDLG 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4547g00005 555 FunFam Transcription factor GAMYB 92 138 - -
Vium4547g00005 555 FunFam MYB-related transcription factor 36 89 - -
Vium4547g00005 555 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 21 501 - -
Vium4547g00005 555 Pfam Myb-like DNA-binding domain 90 133 IPR001005 -
Vium4547g00005 555 Pfam Myb-like DNA-binding domain 37 84 IPR001005 -
Vium4547g00005 555 SMART sant 89 137 IPR001005 -
Vium4547g00005 555 SMART sant 36 86 IPR001005 -
Vium4547g00005 555 CDD SANT 39 84 IPR001005 -
Vium4547g00005 555 ProSiteProfiles Myb-like domain profile. 85 135 IPR001005 -
Vium4547g00005 555 CDD SANT 92 133 IPR001005 -
Vium4547g00005 555 Gene3D - 92 138 - -
Vium4547g00005 555 ProSiteProfiles Myb-like domain profile. 32 84 IPR001005 -
Vium4547g00005 555 Gene3D - 36 89 - -
Vium4547g00005 555 MobiDBLite consensus disorder prediction 380 403 - -
Vium4547g00005 555 MobiDBLite consensus disorder prediction 380 400 - -
Vium4547g00005 555 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 84 IPR017930 -
Vium4547g00005 555 SUPERFAMILY Homeodomain-like 36 131 IPR009057 -
Vium4547g00005 555 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 139 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4547g00005 Vium-Chr4547 32835 38422 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4547g00005 22 537 MYB Transcription Factor Family AT3G11440 43.885 7.22e-119 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium4547g00005 Myb_DNA-binding 2.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4547g00005 K09422 - gmx:100810415 847.04