Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4547g00002 ATGCCAGTGATAGAAATTGGTGGTGCTCTTTTTGGTGCTGTCCTTCAGGTGCTGTTTGACAAGCTTGATTCTCGTCAAGTTCTGGACTACTTTCGTAGAAGAAAGTTCGACGAGAAGCTCCTGAAGAAGTTGAAGAGGAAACTGGTATCCATTAATGCCGGGGTTGATGATGCAGAAAAAAAGCAGTTCAGAAATGCCTATGTGAAAGCATGGCTTGATGAGGTAAGAGACGTGTTGCTTGATACAGAGGATTTGATGGATGAAATATACTATGAATTCTCCAGATATGGGTTGGAAGTTGAATCCCATAGCAGTTCTAGTCAGGTATGTATTTTTATATCTAGGATTAAAGAAGTCCTTGATGACCTAGAATGTCTACTAAACCAAATGGATGATCTAGGTTTGAAAAATGCTAGCGGGGTAGGGGTTGGGTTAGGGTTGAATAGTAATGTGTCACAGAAATTGCCATCAACATCTTTGGTGGTTGAAAATATTATTTATGGAAGAGATGATGAAAAAGAAATGATCCTCAAATGGATGACTTCAGACACTGAAAAGCATAGCTGGCCTCACAATAGCCAACTATCTATACTGTCTGTCGTGGGTATGGGTGGGTTGGGTAAGACAACACTTGCTCAACATGTGTACAATGACCCAAGGATAGAGGGTAAATTTGCTATCAAAGGTTGGGTTTATGTTTCAGATGAATTTGATGTTTTAATGTTGACAAAAACAATTTTTGGGGTACTCACGAAATCAAAAGATGATAGTGTAGACCTAGAAATGGTTCAAGGAAGATTGAAAGAAAAACTGACAGGAAGGAGGTTTCTTGTCGTTCTGGATGATGTTTGGAACGAAGACCGAGCCCAGTGGAAAGCTTTGCAAACTCCTCTCAATTATGGGGCTAAGGGAAGTAAAATTCTTGTCACCACACGCAGTAACAGAGTTGCTTCTATCGTGCAATCAAATAAACTACATGAACTGAAGCAATTAGGTGGAGATCACAGCTGGCAAGTTTTTGCTAAACATGCATTCCAAGATGATAATTCCCAGATGAATGCTGAGGTGAAAGAGATTGGTACAAAGATAGTTGAAAAGTGCAGAGGATTGCCTCTAGCCTTGGAAACAGTTGGATGTCTTTTACGCTCAAAGTCTTCTGTTGCAGAATGGAAAAGTGTATTGTCAAGCGAGATATGGGACTTCCCTGAAGAAGATAGCAAAATCATCCCTGCCCTATTGTTGAGTTATTACCATCTTCCTTCCTATCTCAAGAGATGTTTCTCTTACTGTGCCATGTTTCCTAAAGATCATGAATTTGACAAGAAGAATTTAATTCAGTTATGGATGGCTGAAAATTTTCTTCAACGCTCTCAACAGAGTAAGTCTCAGGAAGAAGTTGGCGAACATTACTTCAATGTTCTATTATCAAGGTGCTTCTTTCAACAATCCAGTGAAGGCTTCAAATCATGTTTTGTCATGCATGACCTTCTTAACGATTTGGCAAAATATGTTTCTGGTGACATCTGTTTCAGGTTTGGAATTGATAGAGCAAAGAGAACACTGAAGGAAACACGCCACTTTTCATTTGTTATTGATGACTATGGAGTATCATGTAATGAGTACGAGAATTTATATGATGCAAAAGGGCTACGGACATTTTTGCCTGTAACTAGGATATCTTATTGGTCTTGGTATTGTGAGACTTTGACGCTTGAGTTGATATTTAAGTTGAAGTGCTTACACGTTTTATCTTTTTGTGGTTGTGTTAACCTTAAAGAGGTACCTGAAACTATAGGCAATCTTATACATCTCCGGTTTTTAGACCTCTCAAATACTGGAATTCAAAAGCTGCCCGACACAATGTGTTCACTATGTAACTTACAAACATTGAAGCTGAACAGTTGTGTGAATTTGAAGGAGCTGCCCTGTAATTTACATAAACTAACCAATTTGTGTTGTCTTGAACTTATGAAAAACAGTCTGACAAAGATGCCAATGCATATAGGAAAACTGAAGAATCTTGAAATATTCATGAGTCCTTTCAATGTTGGCAAAAGTAGTGAGCTATGTATCCAACAGTTAGGAGAACTCAGTCTTCATGGAGATCTATTAATTAAGGATCTGCAGAACACTGTGAATCCCATGGATGCATTGGCAGCAGATTTGAAGAGTAAAACATGTCTGGTACGGTTAAATTTGCACTGGGATTTGGAGCAGAACCTTGTGAATTTCATGAAAGAAAGAGAAATACTTGAGAATTTGCAGCCTTCCAGACATTTGGAGGAGTTGTCAATCAGTGACTATGGTGGCATACAATTTCCACATTGGTTATCTGATAATTCATTATCGAATCTAGTGTCCTTAAGCTTGATCAATTGTAAACATTGCCTGTTGTTGCCTTCCCTCGAATTCTTGACATTTCTTAGGCACCTGACAATTAGTGGGCATGATTGGATACGGACGATAGATGCTGATTTTTACAGGAATAGTTGTTCTGCATTTGCATCCTTGCAAACGTTAAACTTTGCTGATATGAAGGAATGGGAAGAATGGCAATGTAGGACAGGTGATTTTCAAAGTCTTTCTGTGACTAATTGTCCCAAGCTGAAAGGACAATTGCCAAAACAACTTTCTCATTTAAGGAAACTAATTATTGAGGACTGCAAACAACTTGTGACTCTTGCTCCCAGGACCCTAGAAATTTGTGAATTACAACTGCGAGACTGTGGAAAGCTGCAAATTGATTATAATCCAACTACATTGAAAAGGCTCCAGATTGGAGGTGACAACATGGAGGCATCATTACTTGAAAGGCTTGGCCATATCATATCGCATGCTTCTCTTGAATCCTTCACCATTTTTTCTTGTCCGAATATGAATATTCCTATCAACCATTGCTTTGATTTCCTTGAAAAATTGCATATCGGTGGTGGTTGTGACTCTCTGACAAACTTTCCTCTAGATTTCTTCCCAAAACTCTCTGAGCTTGAGTTATCGGAGTGTCCTAACCTACAGATGATAACACAGGGGCACCCTCTTAATCATTTGAAGATTCTGCGGATTGGAAAGTGCTCTAGATTTGAATATTTTCCCAATGAAGGATTATTTGCCCGGAAGCTAGAGAGCTTTTATATTATAGGATTGGAGAAATTGAAATCATTGCCTAAACGCATGTCTGTGCTTCTTCCATCTCTTAATCTTCTGTATATAAATAATTGTCCAGATGTGGAGGTTTCCGACGGATGTTTGCCATCAAATCTAAGTGAAATGTGTCTCTTCAATTGCTCCAAACTTATTGCCTCACTAAAGGGTCCTTGGGGAACCAACCCTTCCCTAAAATCCTTGTCTATTGGCAAAGTGGACGAGGACTGTTTTCCAAGTGACGGATTGCTCCCACTCTCTGTTACTAATCTAGAGATATATGATTGTCCAAATCTTAAGAAACTGGATTATAGGGGTCTCTGTCACCTGCTCTCTCTTGAGAAATTGTTTCTTTATAAGTGTCCTATACTCCAATGCTTGCCAGAGGAGGGTCTGCCCAAATCCATTTCAAAACTTAGAGTTGAAGGCTGCCCGTTGATCAAACAGCGCTGCAAGAAACAAGAAGGTGAAGACTGGCAAAAGATTGCACACATTAAATACATAATGGTTGACAGAGAACGAGTGAACATATAA 3675 0.391 MPVIETXGGALFGAVLQVLFDKLDSRQVLDYFRRRKFDEKLLKKLKRKLVSINAGVDDAEKKQFRNAYVKAWLDEVRDVLLDTEDLMDEIYYEFSRYGLEVESHSSSSQVCIFISRIKEVLDDLECLLNQMDDLGLKNASGVGVGLGLNSNVSQKLPSTSLVVENIIYGRDDEKEMILKWMTSDTEKHSWPHNSQLSILSVVGMGGLGKTTLAQHVYNDPRIEGKFAIKGWVYVSDEFDVLMLTKTIFGVLTKSKDDSVDLEMVQGRLKEKLTGRRFLVVLDDVWNEDRAQWKALQTPLNYGAKGSKILVTTRSNRVASIVQSNKLHELKQLGGDHSWQVFAKHAFQDDNSQMNAEVKEIGTKIVEKCRGLPLALETVGCLLRSKSSVAEWKSVLSSEIWDFPEEDSKIIPALLLSYYHLPSYLKRCFSYCAMFPKDHEFDKKNLIQLWMAENFLQRSQQSKSQEEVGEHYFNVLLSRCFFQQSSEGFKSCFVMHDLLNDLAKYVSGDICFRFGIDRAKRTLKETRHFSFVIDDYGVSCNEYENLYDAKGLRTFLPVTRISYWSWYCETLTLELIFKLKCLHVLSFCGCVNLKEVPETIGNLIHLRFLDLSNTGIQKLPDTMCSLCNLQTLKLNSCVNLKELPCNLHKLTNLCCLELMKNSLTKMPMHIGKLKNLEIFMSPFNVGKSSELCIQQLGELSLHGDLLIKDLQNTVNPMDALAADLKSKTCLVRLNLHWDLEQNLVNFMKEREILENLQPSRHLEELSISDYGGIQFPHWLSDNSLSNLVSLSLINCKHCLLLPSLEFLTFLRHLTISGHDWIRTIDADFYRNSCSAFASLQTLNFADMKEWEEWQCRTGDFXQSLSVTNCPKLKGQLPKQLSHLRKLIIEDCKQLVTLAPRTLEICELQLRDCGKLQIDYNPTTLKRLQIGGDNMEASLLERLGHIISHASLESFTIFSCPNMNIPINHCFDFLEKLHIGGGCDSLTNFPLDFFPKLSELELSECPNLQMITQGHPLNHLKILRIGKCSRFEYFPNEGLFARKLESFYIIGLEKLKSLPKRMSVLLPSLNLLYINNCPDVEVSDGCLPSNLSEMCLFNCSKLIASLKGPWGTNPSLKSLSIGKVDEDCFPSDGLLPLSVTNLEIYDCPNLKKLDYRGLCHLLSLEKLFLYKCPILQCLPEEGLPKSISKLRVEGCPLIKQRCKKQEGEDWQKIAHIKYIMVDRERVNI 1226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4547g00002 1226 SUPERFAMILY L domain-like 493 895 - -
Vium4547g00002 1226 Coils Coil 114 137 - -
Vium4547g00002 1226 PRINTS Disease resistance protein signature 198 213 - -
Vium4547g00002 1226 PRINTS Disease resistance protein signature 990 1006 - -
Vium4547g00002 1226 PRINTS Disease resistance protein signature 368 382 - -
Vium4547g00002 1226 PRINTS Disease resistance protein signature 271 285 - -
Vium4547g00002 1226 PANTHER DISEASE RESISTANCE PROTEIN RP 42 890 IPR044974 GO:0006952
Vium4547g00002 1226 Gene3D - 332 415 IPR042197 -
Vium4547g00002 1226 Gene3D Ribonuclease Inhibitor 526 680 IPR032675 -
Vium4547g00002 1226 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 431 IPR027417 -
Vium4547g00002 1226 Pfam Rx N-terminal domain 13 96 IPR041118 -
Vium4547g00002 1226 Gene3D - 416 504 IPR036388 -
Vium4547g00002 1226 FunFam Probable disease resistance protein At1g63360 417 504 - -
Vium4547g00002 1226 SUPERFAMILY L domain-like 905 1212 - -
Vium4547g00002 1226 Gene3D - 151 327 IPR027417 -
Vium4547g00002 1226 Gene3D Ribonuclease Inhibitor 1038 1207 IPR032675 -
Vium4547g00002 1226 Gene3D Ribonuclease Inhibitor 877 1036 IPR032675 -
Vium4547g00002 1226 Gene3D Ribonuclease Inhibitor 690 876 IPR032675 -
Vium4547g00002 1226 Gene3D - 16 127 - -
Vium4547g00002 1226 Pfam NB-ARC domain 193 396 IPR002182 GO:0043531
Vium4547g00002 1226 Coils Coil 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4547g00002 Vium-Chr4547 11317 22075 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4547g00002 199 390 WRKY Transcription Factor Family AT5G45050 25.510 1.85e-09 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4547g00002 - - gmx:100789590 1508.04