Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4547g00001 ATGATGTCTGAAGAGTCACTGAGTATTGTGGTGATCCACTATGCATCAAGAGACTTCAACACAAGGGCCATAAAAGTGGTCATGCAGGGATTTTCACTCGGTCGTGGAGACAAGCTTACACTTCTTGTAATTCTTCGCCAAGCTTATAGTCCCACTAGGCTTCCCTTCATTGCACCTGCAAAATTGCGTGGATTATTTGAGACTGATCACAAAATTGTTGAGGAAGAAGTTGCTAAGAAGAAAGAAGAGCTTCTTAATAATGCAAGCTTAAGGGAAATTTCTGAGTTGTGTGAAGCAGACATGATTCAATTCCGGATAGAAGTTCTGCAGGGTAAATTACCAGAGGTTGCGGTAAATGCTGCCATCCGTCTGGAGGCAACATCAGTGATAATTGATAGACAGATGAAGAAATATAAGAAGGAATTCAAGCAGAGTCTCTTTTGTTCTTTGCTAATAACGAAACGTGACAACTCTGTGCAACACTTGAGAGGGCCAAGGGAAACACATCTGTGTGATGGAAGCAATGGAAATGCAAGATTTGATGCAATGGTGTGTGAAGCAGGTCCTAATTCTAAATCTCCTCCAAGAATACGGCAAGTGACAAATTCCTGCTCCAATACCAGCTCTTCCTTTCCTACTCTTGCAAAGGGTGGTTGCCCCCAACCCCAACTTTATTCTCAAATAAAACAAATCCCTGAAAATAGAGTACAAGACATGGAAAGAGGGTATTGCCTACTATCCATTACTGATACTCAAAAGACTAATCATACTGAAGAGTATAACATAGAAACACCAGCAGAACATAGCAACAACCCTGAAGCATATCAAATAGTTGAACAATTCAAAAATTCTGTTTGCTCAGTGTGCAAGAACAGAAGACCAAAATTTGAAGTGATGAAAGAATTCACATACGCAGAGCTGCATGAAGCTACACAAGGTTTTTCACCAAAAAACTATTTGTCCGAAGGAGGATTTGGTTCTGTCTACAAAGGAAGGCTGCAAGGAGGATTAAGGATTGCTGTTAAGCAACATAAGTGTGCAAGCCTCCAAGGAGAGAAGGAATTCAAATCTGAGGTCAATGCACTCAGCAGAGCTATACATGAGAATGTGGTCATGCTGCGTGGATCTTGTTCAGAAGGAAATAACAGGCTTCTGGTGTATGAATTTATTTGCAATGGCTCTCTTGACCAACATTTATCACAACACTCACGTAGGCCACTTACTTGGAAAGAAAGGATCAAAGTAGCTATTGGAGCTGCAAGAGGCTTGTTGTACTTGCATCAGAACAATATAATACACCGAGATATGAGGCCTAGCAACATCCTTGTTACACATGATTATGAAGCAATGCTTGGAGATTTTGGTCTGGCTAGAACTGAACAAATGGACTCCTTATACTCCACAGATGTTGTTGGAACTATAGGGTATTTGGCACCAGAATATGCAGAGTCAGGAAAACTGTCAACCAAGACAGATGTGTATGCTTTCGGTGTGGTTCTTCTTCAGCTAATAACTGGAATGAGGACTGCAGACAAACGTCTTGGCGAAAAAAGTCTTGTGGGATGGGCTAGGCCACTACTCAAAGAAAGGAACTATCCAGATCTACTTGATGAAAGGATGTTGGATAATCACGATTGCCATCAGCTTTTCTGGATGATTCGTCTGGCAGAAAAATGCCTCAGCAGGGATTCTCAGAGGCGATTATCAATGGATACAGTGGTGAATGCCTTAACTCATATACTGGAAGGCAACACATGCAGTGTTGTTCTAAGAGACTGCTCTCCAGCACAATCAGATTCATCATATGACATGTCAGACTTGCTTATCCCAGATACCTCACAGGAGATAGAAGGTGAAGATACAAGCAACTATGCAGGATATGCTTCTATGTGCTTTAGACCACCACCATCTCCTCCACTAGGAAGCACTTCCTCAAGTACATCAAGCGTGTTCACAGGGCTGAGTGAATCTCCTATAGATGATTTGTCCAATAATAAGAATAAGGGTATAAGGGCAAATGAACAAGGTGGGATACTCTAA 2040 0.4162 MMSEESLSIVVIHYASRDFNTRAIKVVMQGFSLGRGDKLTLLVILRQAYSPTRLPFIAPAKLRGLFETDHKIVEEEVAKKKEELLNNASLREISELCEADMIQFRIEVLQGKLPEVAVNAAIRLEATSVIIDRQMKKYKKEFKQSLFCSLLITKRDNSVQHLRGPRETHLCDGSNGNARFDAMVCEAGPNSKSPPRIRQVTNSCSNTSSSFPTLAKGGCPQPQLYSQIKQIPENRVQDMERGYCLLSITDTQKTNHTEEYNIETPAEHSNNPEAYQIVEQFKNSVCSVCKNRRPKFEVMKEFTYAELHEATQGFSPKNYLSEGGFGSVYKGRLQGGLRIAVKQHKCASLQGEKEFKSEVNALSRAIHENVVMLRGSCSEGNNRLLVYEFICNGSLDQHLSQHSRRPLTWKERIKVAIGAARGLLYLHQNNIIHRDMRPSNILVTHDYEAMLGDFGLARTEQMDSLYSTDVVGTIGYLAPEYAESGKLSTKTDVYAFGVVLLQLITGMRTADKRLGEKSLVGWARPLLKERNYPDLLDERMLDNHDCHQLFWMIRLAEKCLSRDSQRRLSMDTVVNALTHILEGNTCSVVLRDCSPAQSDSSYDMSDLLIPDTSQEIEGEDTSNYAGYASMCFRPPPSPPLGSTSSSTSSVFTGLSESPIDDLSNNKNKGIRANEQGGIL 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4547g00001 679 FunFam Proline-rich receptor-like protein kinase PERK8 276 389 - -
Vium4547g00001 679 Pfam Protein tyrosine and serine/threonine kinase 318 577 IPR001245 GO:0004672|GO:0006468
Vium4547g00001 679 MobiDBLite consensus disorder prediction 635 679 - -
Vium4547g00001 679 SUPERFAMILY Protein kinase-like (PK-like) 299 593 IPR011009 -
Vium4547g00001 679 ProSiteProfiles Protein kinase domain profile. 314 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4547g00001 679 PANTHER OS01G0253100 PROTEIN 256 581 - -
Vium4547g00001 679 Gene3D Phosphorylase Kinase; domain 1 276 389 - -
Vium4547g00001 679 MobiDBLite consensus disorder prediction 642 671 - -
Vium4547g00001 679 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X1 390 592 - -
Vium4547g00001 679 ProSitePatterns Tyrosine protein kinases specific active-site signature. 431 443 IPR008266 GO:0004672|GO:0006468
Vium4547g00001 679 Gene3D Transferase(Phosphotransferase) domain 1 390 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4547g00001 Vium-Chr4547 6472 11022 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4547g00001 302 598 Trihelix Transcription Factor Family AT5G38560 45.955 1.12e-80 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vium4547g00001 PK_Tyr_Ser-Thr 7.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4547g00001 - - vum:124838318 1320.06